Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metG and OKGIIK_04690 are separated by 227 nucleotides OKGIIK_04690 and apbC are separated by 156 nucleotides
OKGIIK_04685: metG - methionine--tRNA ligase, at 1,022,717 to 1,024,846
metG
OKGIIK_04690: OKGIIK_04690 - DUF2147 domain-containing protein, at 1,025,074 to 1,025,538
_04690
OKGIIK_04695: apbC - iron-sulfur cluster carrier protein ApbC, at 1,025,695 to 1,026,789
apbC
Position (kb)
1025
1026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1024.854 kb on - strand at 1024.854 kb on - strand at 1024.854 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.274 kb on + strand, within OKGIIK_04690 at 1025.378 kb on + strand, within OKGIIK_04690 at 1025.378 kb on + strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.563 kb on + strand at 1025.564 kb on - strand at 1025.564 kb on - strand at 1025.664 kb on + strand at 1025.664 kb on + strand at 1025.664 kb on + strand at 1025.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,024,854 - -1.5 1,024,854 - -0.2 1,024,854 - +1.0 1,024,875 - -1.3 1,024,875 - +1.0 1,024,875 - +0.1 1,024,875 - +0.0 1,024,875 - +0.0 1,024,875 - -1.0 1,025,126 + OKGIIK_04690 0.11 -0.4 1,025,126 + OKGIIK_04690 0.11 -1.4 1,025,126 + OKGIIK_04690 0.11 +1.1 1,025,126 + OKGIIK_04690 0.11 -1.8 1,025,126 + OKGIIK_04690 0.11 +1.0 1,025,126 + OKGIIK_04690 0.11 +1.9 1,025,126 + OKGIIK_04690 0.11 -0.4 1,025,127 - OKGIIK_04690 0.11 +0.5 1,025,127 - OKGIIK_04690 0.11 -0.5 1,025,127 - OKGIIK_04690 0.11 +0.7 1,025,127 - OKGIIK_04690 0.11 -2.4 1,025,127 - OKGIIK_04690 0.11 +0.5 1,025,180 + OKGIIK_04690 0.23 +0.5 1,025,180 + OKGIIK_04690 0.23 +0.6 1,025,180 + OKGIIK_04690 0.23 -1.8 1,025,180 + OKGIIK_04690 0.23 +0.1 1,025,181 - OKGIIK_04690 0.23 -0.2 1,025,181 - OKGIIK_04690 0.23 +2.4 1,025,181 - OKGIIK_04690 0.23 +1.9 1,025,181 - OKGIIK_04690 0.23 -0.4 1,025,181 - OKGIIK_04690 0.23 +0.4 1,025,181 - OKGIIK_04690 0.23 +0.9 1,025,181 - OKGIIK_04690 0.23 +0.7 1,025,181 - OKGIIK_04690 0.23 +0.2 1,025,181 - OKGIIK_04690 0.23 +0.9 1,025,274 + OKGIIK_04690 0.43 +0.0 1,025,378 + OKGIIK_04690 0.65 +1.0 1,025,378 + OKGIIK_04690 0.65 -1.5 1,025,379 - OKGIIK_04690 0.66 +0.2 1,025,379 - OKGIIK_04690 0.66 +1.0 1,025,379 - OKGIIK_04690 0.66 -0.2 1,025,563 + -0.2 1,025,564 - -1.2 1,025,564 - +0.6 1,025,664 + -2.0 1,025,664 + -2.0 1,025,664 + +1.8 1,025,664 + +0.5
Or see this region's nucleotide sequence