Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04525 and OKGIIK_04530 are separated by 193 nucleotides OKGIIK_04530 and rsuA are separated by 99 nucleotides rsuA and ssuD are separated by 17 nucleotides
OKGIIK_04525: OKGIIK_04525 - Histidine kinase, at 991,563 to 992,597
_04525
OKGIIK_04530: OKGIIK_04530 - hypothetical protein, at 992,791 to 992,892
_04530
OKGIIK_04535: rsuA - RNA-binding protein, at 992,992 to 993,801
rsuA
OKGIIK_04540: ssuD - LLM class flavin-dependent oxidoreductase, at 993,819 to 994,817
ssuD
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 992.191 kb on + strand, within OKGIIK_04525 at 992.433 kb on + strand, within OKGIIK_04525 at 992.433 kb on + strand, within OKGIIK_04525 at 992.434 kb on - strand, within OKGIIK_04525 at 992.434 kb on - strand, within OKGIIK_04525 at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.588 kb on + strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.589 kb on - strand at 992.650 kb on + strand at 992.651 kb on - strand at 992.651 kb on - strand at 992.675 kb on - strand at 992.792 kb on + strand at 992.793 kb on - strand at 992.793 kb on - strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.928 kb on + strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.929 kb on - strand at 992.933 kb on + strand at 992.933 kb on + strand at 992.934 kb on - strand at 992.934 kb on - strand at 992.934 kb on - strand at 992.934 kb on - strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.947 kb on + strand at 992.948 kb on - strand at 992.948 kb on - strand at 992.948 kb on - strand at 993.018 kb on - strand at 993.018 kb on - strand at 993.494 kb on + strand, within rsuA at 993.494 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.641 kb on + strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.642 kb on - strand, within rsuA at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.746 kb on + strand at 993.747 kb on - strand at 994.017 kb on - strand, within ssuD at 994.017 kb on - strand, within ssuD at 994.017 kb on - strand, within ssuD at 994.110 kb on + strand, within ssuD at 994.110 kb on + strand, within ssuD at 994.185 kb on + strand, within ssuD at 994.186 kb on - strand, within ssuD at 994.236 kb on + strand, within ssuD at 994.236 kb on + strand, within ssuD at 994.236 kb on + strand, within ssuD at 994.237 kb on - strand, within ssuD at 994.237 kb on - strand, within ssuD at 994.416 kb on + strand, within ssuD at 994.416 kb on + strand, within ssuD at 994.417 kb on - strand, within ssuD at 994.458 kb on + strand, within ssuD at 994.459 kb on - strand, within ssuD at 994.459 kb on - strand, within ssuD at 994.602 kb on + strand, within ssuD at 994.602 kb on + strand, within ssuD at 994.603 kb on - strand, within ssuD at 994.603 kb on - strand, within ssuD
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 992,191 + OKGIIK_04525 0.61 -0.2 992,433 + OKGIIK_04525 0.84 -0.3 992,433 + OKGIIK_04525 0.84 +0.0 992,434 - OKGIIK_04525 0.84 +0.2 992,434 - OKGIIK_04525 0.84 -0.5 992,588 + +1.0 992,588 + +1.1 992,588 + -0.4 992,588 + -1.7 992,588 + -2.2 992,588 + -2.4 992,588 + +0.0 992,588 + +0.1 992,588 + +1.2 992,589 - +1.4 992,589 - -0.6 992,589 - -1.1 992,589 - +1.4 992,589 - +0.0 992,589 - -1.2 992,589 - -1.5 992,589 - +1.4 992,589 - -0.5 992,589 - +0.2 992,589 - -0.5 992,589 - -1.3 992,589 - +1.8 992,650 + +0.0 992,651 - +0.4 992,651 - -0.4 992,675 - -0.8 992,792 + +0.2 992,793 - +0.3 992,793 - +0.0 992,928 + +2.1 992,928 + +0.3 992,928 + +1.8 992,928 + -0.2 992,928 + -0.5 992,928 + +0.2 992,928 + +1.8 992,928 + -0.6 992,928 + -0.4 992,928 + +0.7 992,928 + -0.5 992,928 + +0.0 992,928 + -1.6 992,928 + -0.1 992,928 + -2.0 992,928 + +1.2 992,928 + -0.8 992,928 + -0.2 992,929 - -0.1 992,929 - -0.7 992,929 - +0.0 992,929 - -2.5 992,929 - -1.5 992,929 - -1.4 992,929 - +1.2 992,929 - +0.5 992,933 + -1.4 992,933 + -0.8 992,934 - +0.5 992,934 - -2.2 992,934 - -1.0 992,934 - -0.5 992,947 + -1.6 992,947 + +0.3 992,947 + -0.5 992,947 + -0.2 992,947 + +0.3 992,947 + -1.2 992,947 + +0.3 992,948 - -0.3 992,948 - +1.0 992,948 - -0.5 993,018 - -0.7 993,018 - -2.0 993,494 + rsuA OKGIIK_04535 0.62 -1.1 993,494 + rsuA OKGIIK_04535 0.62 +1.3 993,641 + rsuA OKGIIK_04535 0.80 -0.5 993,641 + rsuA OKGIIK_04535 0.80 +0.3 993,641 + rsuA OKGIIK_04535 0.80 -3.2 993,641 + rsuA OKGIIK_04535 0.80 -0.5 993,641 + rsuA OKGIIK_04535 0.80 +0.0 993,641 + rsuA OKGIIK_04535 0.80 -0.7 993,641 + rsuA OKGIIK_04535 0.80 -0.7 993,641 + rsuA OKGIIK_04535 0.80 -0.2 993,641 + rsuA OKGIIK_04535 0.80 +0.0 993,641 + rsuA OKGIIK_04535 0.80 +0.1 993,641 + rsuA OKGIIK_04535 0.80 -0.5 993,641 + rsuA OKGIIK_04535 0.80 +0.3 993,641 + rsuA OKGIIK_04535 0.80 -0.2 993,641 + rsuA OKGIIK_04535 0.80 -1.2 993,641 + rsuA OKGIIK_04535 0.80 +0.0 993,642 - rsuA OKGIIK_04535 0.80 -0.5 993,642 - rsuA OKGIIK_04535 0.80 +0.3 993,642 - rsuA OKGIIK_04535 0.80 +1.0 993,642 - rsuA OKGIIK_04535 0.80 -0.8 993,642 - rsuA OKGIIK_04535 0.80 -1.2 993,642 - rsuA OKGIIK_04535 0.80 +0.0 993,642 - rsuA OKGIIK_04535 0.80 -0.7 993,642 - rsuA OKGIIK_04535 0.80 -3.0 993,642 - rsuA OKGIIK_04535 0.80 -1.0 993,642 - rsuA OKGIIK_04535 0.80 -0.5 993,642 - rsuA OKGIIK_04535 0.80 -0.5 993,642 - rsuA OKGIIK_04535 0.80 +0.3 993,642 - rsuA OKGIIK_04535 0.80 -0.2 993,642 - rsuA OKGIIK_04535 0.80 -0.9 993,642 - rsuA OKGIIK_04535 0.80 -0.2 993,642 - rsuA OKGIIK_04535 0.80 -0.2 993,642 - rsuA OKGIIK_04535 0.80 -1.3 993,642 - rsuA OKGIIK_04535 0.80 -1.0 993,642 - rsuA OKGIIK_04535 0.80 -0.2 993,642 - rsuA OKGIIK_04535 0.80 +1.1 993,642 - rsuA OKGIIK_04535 0.80 +0.3 993,642 - rsuA OKGIIK_04535 0.80 +1.5 993,642 - rsuA OKGIIK_04535 0.80 -0.7 993,642 - rsuA OKGIIK_04535 0.80 +1.5 993,642 - rsuA OKGIIK_04535 0.80 +0.8 993,642 - rsuA OKGIIK_04535 0.80 +0.5 993,746 + +1.0 993,746 + -0.9 993,746 + -1.1 993,746 + -0.7 993,746 + -0.8 993,746 + -1.1 993,746 + -0.8 993,746 + -0.7 993,746 + -0.1 993,747 - -0.7 994,017 - ssuD OKGIIK_04540 0.20 +1.8 994,017 - ssuD OKGIIK_04540 0.20 +0.4 994,017 - ssuD OKGIIK_04540 0.20 +0.3 994,110 + ssuD OKGIIK_04540 0.29 -0.1 994,110 + ssuD OKGIIK_04540 0.29 -0.2 994,185 + ssuD OKGIIK_04540 0.37 +0.4 994,186 - ssuD OKGIIK_04540 0.37 +0.2 994,236 + ssuD OKGIIK_04540 0.42 -0.2 994,236 + ssuD OKGIIK_04540 0.42 -0.6 994,236 + ssuD OKGIIK_04540 0.42 -0.1 994,237 - ssuD OKGIIK_04540 0.42 -0.4 994,237 - ssuD OKGIIK_04540 0.42 -1.5 994,416 + ssuD OKGIIK_04540 0.60 -0.5 994,416 + ssuD OKGIIK_04540 0.60 +0.8 994,417 - ssuD OKGIIK_04540 0.60 -0.3 994,458 + ssuD OKGIIK_04540 0.64 +0.0 994,459 - ssuD OKGIIK_04540 0.64 +0.4 994,459 - ssuD OKGIIK_04540 0.64 +0.4 994,602 + ssuD OKGIIK_04540 0.78 +0.4 994,602 + ssuD OKGIIK_04540 0.78 -0.3 994,603 - ssuD OKGIIK_04540 0.78 +1.2 994,603 - ssuD OKGIIK_04540 0.78 -0.3
Or see this region's nucleotide sequence