Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04270

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_04265 and OKGIIK_04270 are separated by 283 nucleotidesOKGIIK_04270 and OKGIIK_04275 are separated by 144 nucleotidesOKGIIK_04275 and OKGIIK_04280 are separated by 42 nucleotides OKGIIK_04265: OKGIIK_04265 - hypothetical protein, at 931,160 to 931,948 _04265 OKGIIK_04270: OKGIIK_04270 - alkyl hydroperoxide reductase, at 932,232 to 932,807 _04270 OKGIIK_04275: OKGIIK_04275 - Transcriptional regulator, at 932,952 to 933,317 _04275 OKGIIK_04280: OKGIIK_04280 - hypothetical protein, at 933,360 to 933,692 _04280 Position (kb) 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.430 kb on + strand, within OKGIIK_04265at 931.430 kb on + strand, within OKGIIK_04265at 931.430 kb on + strand, within OKGIIK_04265at 931.431 kb on - strand, within OKGIIK_04265at 931.431 kb on - strand, within OKGIIK_04265at 931.431 kb on - strand, within OKGIIK_04265at 931.431 kb on - strand, within OKGIIK_04265at 931.431 kb on - strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.473 kb on + strand, within OKGIIK_04265at 931.474 kb on - strand, within OKGIIK_04265at 931.474 kb on - strand, within OKGIIK_04265at 931.474 kb on - strand, within OKGIIK_04265at 931.474 kb on - strand, within OKGIIK_04265at 931.474 kb on - strand, within OKGIIK_04265at 931.516 kb on + strand, within OKGIIK_04265at 931.516 kb on + strand, within OKGIIK_04265at 931.516 kb on + strand, within OKGIIK_04265at 931.517 kb on - strand, within OKGIIK_04265at 931.517 kb on - strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.523 kb on + strand, within OKGIIK_04265at 931.524 kb on - strand, within OKGIIK_04265at 931.524 kb on - strand, within OKGIIK_04265at 931.532 kb on + strand, within OKGIIK_04265at 931.532 kb on + strand, within OKGIIK_04265at 931.533 kb on - strand, within OKGIIK_04265at 931.549 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.607 kb on + strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.608 kb on - strand, within OKGIIK_04265at 931.947 kb on - strandat 931.947 kb on - strandat 931.947 kb on - strandat 931.969 kb on + strandat 931.970 kb on - strandat 931.970 kb on - strandat 931.993 kb on + strandat 931.994 kb on - strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.154 kb on + strandat 932.155 kb on - strandat 932.155 kb on - strandat 932.155 kb on - strandat 932.155 kb on - strandat 932.155 kb on - strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.279 kb on + strandat 932.280 kb on - strandat 932.280 kb on - strandat 932.499 kb on + strand, within OKGIIK_04270at 932.574 kb on + strand, within OKGIIK_04270at 932.574 kb on + strand, within OKGIIK_04270at 932.574 kb on + strand, within OKGIIK_04270at 932.575 kb on - strand, within OKGIIK_04270at 932.575 kb on - strand, within OKGIIK_04270at 932.575 kb on - strand, within OKGIIK_04270at 932.575 kb on - strand, within OKGIIK_04270at 932.575 kb on - strand, within OKGIIK_04270at 932.649 kb on + strand, within OKGIIK_04270at 932.650 kb on - strand, within OKGIIK_04270at 932.805 kb on + strandat 932.823 kb on + strandat 932.823 kb on + strandat 932.824 kb on - strandat 932.928 kb on + strandat 932.929 kb on - strandat 932.929 kb on - strandat 933.364 kb on + strandat 933.364 kb on + strandat 933.587 kb on - strand, within OKGIIK_04280at 933.598 kb on + strand, within OKGIIK_04280at 933.599 kb on - strand, within OKGIIK_04280at 933.599 kb on - strand, within OKGIIK_04280at 933.620 kb on - strand, within OKGIIK_04280at 933.620 kb on - strand, within OKGIIK_04280at 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.773 kb on + strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.774 kb on - strandat 933.779 kb on + strandat 933.779 kb on + strandat 933.779 kb on + strandat 933.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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931,430 + OKGIIK_04265 0.34 +0.8
931,430 + OKGIIK_04265 0.34 -0.8
931,430 + OKGIIK_04265 0.34 +0.1
931,431 - OKGIIK_04265 0.34 +0.0
931,431 - OKGIIK_04265 0.34 +0.1
931,431 - OKGIIK_04265 0.34 -1.1
931,431 - OKGIIK_04265 0.34 +0.5
931,431 - OKGIIK_04265 0.34 +0.4
931,473 + OKGIIK_04265 0.40 -1.5
931,473 + OKGIIK_04265 0.40 +0.4
931,473 + OKGIIK_04265 0.40 +1.4
931,473 + OKGIIK_04265 0.40 -0.1
931,473 + OKGIIK_04265 0.40 -0.5
931,473 + OKGIIK_04265 0.40 -1.4
931,473 + OKGIIK_04265 0.40 +0.6
931,474 - OKGIIK_04265 0.40 +0.7
931,474 - OKGIIK_04265 0.40 -2.0
931,474 - OKGIIK_04265 0.40 +1.7
931,474 - OKGIIK_04265 0.40 +0.4
931,474 - OKGIIK_04265 0.40 -0.5
931,516 + OKGIIK_04265 0.45 +0.9
931,516 + OKGIIK_04265 0.45 -0.2
931,516 + OKGIIK_04265 0.45 +1.4
931,517 - OKGIIK_04265 0.45 -1.9
931,517 - OKGIIK_04265 0.45 -1.3
931,523 + OKGIIK_04265 0.46 +0.2
931,523 + OKGIIK_04265 0.46 +1.4
931,523 + OKGIIK_04265 0.46 -0.3
931,523 + OKGIIK_04265 0.46 +2.6
931,523 + OKGIIK_04265 0.46 -1.6
931,523 + OKGIIK_04265 0.46 -0.4
931,524 - OKGIIK_04265 0.46 +0.6
931,524 - OKGIIK_04265 0.46 -0.9
931,532 + OKGIIK_04265 0.47 -1.1
931,532 + OKGIIK_04265 0.47 -0.7
931,533 - OKGIIK_04265 0.47 +0.4
931,549 + OKGIIK_04265 0.49 -1.6
931,607 + OKGIIK_04265 0.57 +0.9
931,607 + OKGIIK_04265 0.57 -1.2
931,607 + OKGIIK_04265 0.57 -0.9
931,607 + OKGIIK_04265 0.57 +0.6
931,607 + OKGIIK_04265 0.57 +1.4
931,607 + OKGIIK_04265 0.57 -1.3
931,607 + OKGIIK_04265 0.57 +0.4
931,607 + OKGIIK_04265 0.57 -0.6
931,607 + OKGIIK_04265 0.57 -1.1
931,608 - OKGIIK_04265 0.57 -0.6
931,608 - OKGIIK_04265 0.57 -2.4
931,608 - OKGIIK_04265 0.57 +0.1
931,608 - OKGIIK_04265 0.57 +0.4
931,608 - OKGIIK_04265 0.57 -0.2
931,608 - OKGIIK_04265 0.57 -1.2
931,608 - OKGIIK_04265 0.57 -0.8
931,608 - OKGIIK_04265 0.57 -0.6
931,608 - OKGIIK_04265 0.57 -0.2
931,608 - OKGIIK_04265 0.57 +0.7
931,947 - -0.7
931,947 - -0.2
931,947 - -0.9
931,969 + +0.2
931,970 - +0.3
931,970 - -0.9
931,993 + -1.3
931,994 - -0.1
932,154 + -0.2
932,154 + -1.2
932,154 + +0.4
932,154 + +0.6
932,154 + +0.7
932,154 + +0.4
932,154 + +0.3
932,154 + -0.4
932,154 + +0.4
932,154 + -0.6
932,154 + +0.4
932,154 + -1.1
932,154 + +0.8
932,154 + -0.3
932,155 - -0.1
932,155 - -2.1
932,155 - +0.2
932,155 - -0.1
932,155 - +2.0
932,279 + +0.6
932,279 + -2.2
932,279 + +0.4
932,279 + -0.4
932,279 + +1.0
932,279 + +1.6
932,279 + -1.1
932,279 + -2.0
932,280 - -1.1
932,280 - +0.3
932,499 + OKGIIK_04270 0.46 -0.1
932,574 + OKGIIK_04270 0.59 +0.3
932,574 + OKGIIK_04270 0.59 +0.3
932,574 + OKGIIK_04270 0.59 +0.1
932,575 - OKGIIK_04270 0.60 +0.1
932,575 - OKGIIK_04270 0.60 -0.6
932,575 - OKGIIK_04270 0.60 +1.4
932,575 - OKGIIK_04270 0.60 +0.6
932,575 - OKGIIK_04270 0.60 -0.2
932,649 + OKGIIK_04270 0.72 -1.0
932,650 - OKGIIK_04270 0.73 +1.7
932,805 + -1.3
932,823 + +0.6
932,823 + +0.7
932,824 - -0.2
932,928 + -0.7
932,929 - +0.1
932,929 - -2.4
933,364 + -2.8
933,364 + -0.6
933,587 - OKGIIK_04280 0.68 +0.6
933,598 + OKGIIK_04280 0.71 +0.9
933,599 - OKGIIK_04280 0.72 -0.8
933,599 - OKGIIK_04280 0.72 -0.9
933,620 - OKGIIK_04280 0.78 +0.1
933,620 - OKGIIK_04280 0.78 +1.4
933,773 + -1.5
933,773 + -0.3
933,773 + -2.5
933,773 + -0.3
933,773 + -0.2
933,773 + -0.1
933,773 + -0.0
933,773 + -1.2
933,774 - -0.0
933,774 - -0.6
933,774 - -1.4
933,774 - +0.7
933,774 - +1.1
933,774 - -1.0
933,774 - +0.1
933,774 - +1.3
933,774 - -0.8
933,779 + -1.8
933,779 + -1.1
933,779 + +0.1
933,779 + -1.3

Or see this region's nucleotide sequence