Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04110 and OKGIIK_04115 are separated by 47 nucleotides OKGIIK_04115 and OKGIIK_04120 are separated by 330 nucleotides OKGIIK_04120 and OKGIIK_04130 are separated by 519 nucleotides
OKGIIK_04110: OKGIIK_04110 - IS3 family transposase, at 901,497 to 902,315
_04110
OKGIIK_04115: OKGIIK_04115 - Mobile element protein, at 902,363 to 902,650
_04115
OKGIIK_04120: OKGIIK_04120 - DNA-binding protein, at 902,981 to 903,340
_04120
OKGIIK_04130: OKGIIK_04130 - hypothetical protein, at 903,860 to 904,588
_04130
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.682 kb on + strand at 902.682 kb on + strand at 902.682 kb on + strand at 902.682 kb on + strand at 902.682 kb on + strand at 902.682 kb on + strand at 902.682 kb on + strand at 902.705 kb on + strand at 902.705 kb on + strand at 902.748 kb on + strand at 902.748 kb on + strand at 902.748 kb on + strand at 902.748 kb on + strand at 902.748 kb on + strand at 902.749 kb on - strand at 902.749 kb on - strand at 902.749 kb on - strand at 902.749 kb on - strand at 902.749 kb on - strand at 902.791 kb on - strand at 902.791 kb on - strand at 902.982 kb on + strand at 902.983 kb on - strand at 902.983 kb on - strand at 903.237 kb on + strand, within OKGIIK_04120 at 903.237 kb on + strand, within OKGIIK_04120 at 903.238 kb on - strand, within OKGIIK_04120 at 903.328 kb on - strand at 903.328 kb on - strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.394 kb on + strand at 903.461 kb on + strand at 903.463 kb on + strand at 903.463 kb on + strand at 903.463 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.749 kb on + strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.750 kb on - strand at 903.769 kb on + strand at 903.770 kb on - strand at 903.770 kb on - strand at 903.795 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.849 kb on - strand at 903.849 kb on - strand at 903.849 kb on - strand at 903.849 kb on - strand at 903.849 kb on - strand at 903.899 kb on + strand at 903.899 kb on + strand at 903.899 kb on + strand at 903.899 kb on + strand at 903.899 kb on + strand at 903.900 kb on - strand at 903.900 kb on - strand at 903.900 kb on - strand at 903.900 kb on - strand at 903.900 kb on - strand at 903.900 kb on - strand at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.947 kb on + strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.948 kb on - strand, within OKGIIK_04130 at 903.983 kb on - strand, within OKGIIK_04130 at 904.161 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.184 kb on + strand, within OKGIIK_04130 at 904.185 kb on - strand, within OKGIIK_04130 at 904.185 kb on - strand, within OKGIIK_04130 at 904.185 kb on - strand, within OKGIIK_04130 at 904.185 kb on - strand, within OKGIIK_04130 at 904.216 kb on + strand, within OKGIIK_04130
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 902,682 + -0.3 902,682 + +0.1 902,682 + -0.0 902,682 + -0.1 902,682 + +1.7 902,682 + +1.2 902,682 + -0.1 902,705 + +0.1 902,705 + +2.1 902,748 + -1.5 902,748 + +0.3 902,748 + -2.1 902,748 + -2.2 902,748 + -0.2 902,749 - +1.7 902,749 - -0.2 902,749 - +1.0 902,749 - +0.1 902,749 - +0.4 902,791 - +0.7 902,791 - -1.3 902,982 + -2.9 902,983 - -0.6 902,983 - -2.1 903,237 + OKGIIK_04120 0.71 +1.1 903,237 + OKGIIK_04120 0.71 +0.4 903,238 - OKGIIK_04120 0.71 +1.1 903,328 - +0.4 903,328 - +0.1 903,394 + +1.7 903,394 + +0.5 903,394 + +0.1 903,394 + +0.2 903,394 + +0.1 903,394 + +1.2 903,394 + +0.8 903,394 + -0.4 903,461 + +0.8 903,463 + +0.1 903,463 + -0.7 903,463 + +1.9 903,749 + -0.4 903,749 + -1.4 903,749 + +1.0 903,749 + -0.3 903,749 + +0.4 903,749 + -0.9 903,749 + +0.5 903,749 + -0.3 903,750 - -0.9 903,750 - +0.4 903,750 - +0.7 903,750 - -2.6 903,750 - +0.8 903,750 - -0.6 903,750 - -0.5 903,750 - -0.8 903,750 - -0.7 903,750 - -0.8 903,750 - +1.0 903,750 - -2.1 903,750 - -0.4 903,769 + -0.9 903,770 - -0.0 903,770 - +0.4 903,795 + +0.5 903,848 + -1.5 903,848 + +2.4 903,848 + -1.5 903,848 + -2.6 903,848 + +0.4 903,848 + -1.4 903,848 + -0.4 903,848 + -0.4 903,848 + -2.0 903,849 - +0.1 903,849 - +1.2 903,849 - -0.8 903,849 - +0.9 903,849 - -0.0 903,899 + -0.0 903,899 + -0.4 903,899 + +0.4 903,899 + -1.4 903,899 + +0.1 903,900 - -0.7 903,900 - +0.4 903,900 - -0.5 903,900 - +1.2 903,900 - +0.4 903,900 - -0.2 903,947 + OKGIIK_04130 0.12 +0.2 903,947 + OKGIIK_04130 0.12 +1.4 903,947 + OKGIIK_04130 0.12 +1.4 903,947 + OKGIIK_04130 0.12 +0.2 903,947 + OKGIIK_04130 0.12 +0.1 903,947 + OKGIIK_04130 0.12 -0.5 903,947 + OKGIIK_04130 0.12 -1.8 903,947 + OKGIIK_04130 0.12 +2.0 903,948 - OKGIIK_04130 0.12 -1.1 903,948 - OKGIIK_04130 0.12 -0.5 903,948 - OKGIIK_04130 0.12 -0.2 903,948 - OKGIIK_04130 0.12 +1.7 903,948 - OKGIIK_04130 0.12 -0.8 903,948 - OKGIIK_04130 0.12 -0.3 903,948 - OKGIIK_04130 0.12 -0.4 903,983 - OKGIIK_04130 0.17 -1.8 904,161 + OKGIIK_04130 0.41 -1.1 904,184 + OKGIIK_04130 0.44 -0.6 904,184 + OKGIIK_04130 0.44 -1.4 904,184 + OKGIIK_04130 0.44 -0.4 904,184 + OKGIIK_04130 0.44 +1.1 904,184 + OKGIIK_04130 0.44 +1.0 904,184 + OKGIIK_04130 0.44 +1.0 904,184 + OKGIIK_04130 0.44 -0.2 904,184 + OKGIIK_04130 0.44 +0.6 904,184 + OKGIIK_04130 0.44 +0.2 904,184 + OKGIIK_04130 0.44 -1.2 904,185 - OKGIIK_04130 0.45 +0.2 904,185 - OKGIIK_04130 0.45 -0.2 904,185 - OKGIIK_04130 0.45 -1.9 904,185 - OKGIIK_04130 0.45 +0.8 904,216 + OKGIIK_04130 0.49 +1.7
Or see this region's nucleotide sequence