Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04105

Experiment: R2A_PIPES pH 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_04100 and rAYT are separated by 169 nucleotidesrAYT and OKGIIK_04110 overlap by 30 nucleotidesOKGIIK_04110 and OKGIIK_04115 are separated by 47 nucleotides OKGIIK_04100: OKGIIK_04100 - IS4 family transposase, at 899,669 to 900,877 _04100 OKGIIK_04105: rAYT - REP element-mobilizing transposase RayT, at 901,047 to 901,526 rAYT OKGIIK_04110: OKGIIK_04110 - IS3 family transposase, at 901,497 to 902,315 _04110 OKGIIK_04115: OKGIIK_04115 - Mobile element protein, at 902,363 to 902,650 _04115 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2at 900.910 kb on + strandat 900.911 kb on - strandat 900.911 kb on - strandat 900.911 kb on - strandat 900.911 kb on - strandat 900.929 kb on + strandat 900.929 kb on + strandat 900.929 kb on + strandat 900.930 kb on - strandat 900.930 kb on - strandat 900.930 kb on - strandat 900.930 kb on - strandat 900.930 kb on - strandat 901.153 kb on - strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.206 kb on + strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.207 kb on - strand, within rAYTat 901.220 kb on + strand, within rAYTat 901.220 kb on + strand, within rAYTat 901.221 kb on - strand, within rAYTat 901.249 kb on + strand, within rAYTat 901.250 kb on - strand, within rAYTat 901.280 kb on + strand, within rAYTat 901.280 kb on + strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.281 kb on - strand, within rAYTat 901.296 kb on + strand, within rAYTat 901.296 kb on + strand, within rAYTat 901.296 kb on + strand, within rAYTat 901.296 kb on + strand, within rAYTat 901.296 kb on + strand, within rAYTat 901.297 kb on - strand, within rAYTat 901.297 kb on - strand, within rAYTat 901.297 kb on - strand, within rAYTat 901.335 kb on - strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.353 kb on + strand, within rAYTat 901.354 kb on - strand, within rAYTat 901.354 kb on - strand, within rAYTat 901.354 kb on - strand, within rAYTat 901.354 kb on - strand, within rAYTat 901.383 kb on + strand, within rAYTat 901.384 kb on - strand, within rAYTat 901.384 kb on - strand, within rAYTat 901.384 kb on - strand, within rAYTat 901.384 kb on - strand, within rAYTat 901.384 kb on - strand, within rAYTat 901.404 kb on + strand, within rAYTat 901.404 kb on + strand, within rAYTat 901.404 kb on + strand, within rAYTat 901.404 kb on + strand, within rAYTat 901.404 kb on + strand, within rAYTat 901.405 kb on - strand, within rAYTat 901.405 kb on - strand, within rAYTat 901.455 kb on + strand, within rAYTat 901.456 kb on - strand, within rAYTat 901.456 kb on - strand, within rAYTat 901.470 kb on + strand, within rAYTat 901.470 kb on + strand, within rAYTat 901.471 kb on - strand, within rAYTat 901.471 kb on - strand, within rAYTat 901.499 kb on - strandat 901.499 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strandat 901.525 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
remove
900,910 + -1.3
900,911 - +0.5
900,911 - +0.1
900,911 - +1.7
900,911 - +1.1
900,929 + -1.1
900,929 + -0.7
900,929 + -1.4
900,930 - +0.6
900,930 - -0.0
900,930 - +1.2
900,930 - -0.8
900,930 - -1.5
901,153 - rAYT OKGIIK_04105 0.22 +0.2
901,206 + rAYT OKGIIK_04105 0.33 +0.4
901,206 + rAYT OKGIIK_04105 0.33 -0.7
901,206 + rAYT OKGIIK_04105 0.33 -0.9
901,206 + rAYT OKGIIK_04105 0.33 +0.4
901,206 + rAYT OKGIIK_04105 0.33 -0.6
901,206 + rAYT OKGIIK_04105 0.33 -2.0
901,206 + rAYT OKGIIK_04105 0.33 -0.4
901,206 + rAYT OKGIIK_04105 0.33 -0.8
901,206 + rAYT OKGIIK_04105 0.33 -0.5
901,207 - rAYT OKGIIK_04105 0.33 +2.0
901,207 - rAYT OKGIIK_04105 0.33 -0.6
901,207 - rAYT OKGIIK_04105 0.33 -1.1
901,207 - rAYT OKGIIK_04105 0.33 -0.6
901,207 - rAYT OKGIIK_04105 0.33 +0.4
901,207 - rAYT OKGIIK_04105 0.33 -1.0
901,207 - rAYT OKGIIK_04105 0.33 +0.7
901,220 + rAYT OKGIIK_04105 0.36 -0.2
901,220 + rAYT OKGIIK_04105 0.36 +1.1
901,221 - rAYT OKGIIK_04105 0.36 -0.4
901,249 + rAYT OKGIIK_04105 0.42 +0.4
901,250 - rAYT OKGIIK_04105 0.42 -1.8
901,280 + rAYT OKGIIK_04105 0.49 +0.9
901,280 + rAYT OKGIIK_04105 0.49 -0.9
901,281 - rAYT OKGIIK_04105 0.49 +0.4
901,281 - rAYT OKGIIK_04105 0.49 -0.9
901,281 - rAYT OKGIIK_04105 0.49 -0.8
901,281 - rAYT OKGIIK_04105 0.49 +1.1
901,281 - rAYT OKGIIK_04105 0.49 +0.4
901,281 - rAYT OKGIIK_04105 0.49 -0.9
901,281 - rAYT OKGIIK_04105 0.49 +1.0
901,281 - rAYT OKGIIK_04105 0.49 +0.9
901,296 + rAYT OKGIIK_04105 0.52 -0.6
901,296 + rAYT OKGIIK_04105 0.52 -1.3
901,296 + rAYT OKGIIK_04105 0.52 -0.9
901,296 + rAYT OKGIIK_04105 0.52 +0.6
901,296 + rAYT OKGIIK_04105 0.52 -1.1
901,297 - rAYT OKGIIK_04105 0.52 -0.8
901,297 - rAYT OKGIIK_04105 0.52 +0.1
901,297 - rAYT OKGIIK_04105 0.52 +0.4
901,335 - rAYT OKGIIK_04105 0.60 +0.9
901,353 + rAYT OKGIIK_04105 0.64 -0.6
901,353 + rAYT OKGIIK_04105 0.64 -0.8
901,353 + rAYT OKGIIK_04105 0.64 +0.4
901,353 + rAYT OKGIIK_04105 0.64 -0.1
901,353 + rAYT OKGIIK_04105 0.64 -0.9
901,353 + rAYT OKGIIK_04105 0.64 -1.5
901,354 - rAYT OKGIIK_04105 0.64 +0.4
901,354 - rAYT OKGIIK_04105 0.64 +0.2
901,354 - rAYT OKGIIK_04105 0.64 +0.8
901,354 - rAYT OKGIIK_04105 0.64 -0.3
901,383 + rAYT OKGIIK_04105 0.70 -0.2
901,384 - rAYT OKGIIK_04105 0.70 -0.2
901,384 - rAYT OKGIIK_04105 0.70 +0.8
901,384 - rAYT OKGIIK_04105 0.70 -1.5
901,384 - rAYT OKGIIK_04105 0.70 -1.9
901,384 - rAYT OKGIIK_04105 0.70 +0.7
901,404 + rAYT OKGIIK_04105 0.74 +0.1
901,404 + rAYT OKGIIK_04105 0.74 -0.6
901,404 + rAYT OKGIIK_04105 0.74 +1.0
901,404 + rAYT OKGIIK_04105 0.74 +0.1
901,404 + rAYT OKGIIK_04105 0.74 -1.3
901,405 - rAYT OKGIIK_04105 0.75 +1.2
901,405 - rAYT OKGIIK_04105 0.75 +1.8
901,455 + rAYT OKGIIK_04105 0.85 -0.3
901,456 - rAYT OKGIIK_04105 0.85 +1.5
901,456 - rAYT OKGIIK_04105 0.85 +1.6
901,470 + rAYT OKGIIK_04105 0.88 -0.9
901,470 + rAYT OKGIIK_04105 0.88 -0.6
901,471 - rAYT OKGIIK_04105 0.88 -1.6
901,471 - rAYT OKGIIK_04105 0.88 +1.4
901,499 - -0.1
901,499 - -0.6
901,525 - -0.6
901,525 - -0.4
901,525 - +0.4
901,525 - -1.1
901,525 - +1.0
901,525 - +0.5
901,525 - +0.4
901,525 - -0.4

Or see this region's nucleotide sequence