Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03890
Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A_PIPES pH 4 |
---|---|---|---|---|---|
remove | |||||
853,280 | + | +2.1 | |||
853,280 | + | +0.8 | |||
853,280 | + | -0.5 | |||
853,281 | - | +1.4 | |||
853,281 | - | +2.3 | |||
853,380 | - | panB | OKGIIK_03885 | 0.12 | +2.4 |
853,498 | + | panB | OKGIIK_03885 | 0.27 | +1.4 |
853,499 | - | panB | OKGIIK_03885 | 0.27 | +0.1 |
853,499 | - | panB | OKGIIK_03885 | 0.27 | +2.8 |
853,499 | - | panB | OKGIIK_03885 | 0.27 | +0.4 |
853,499 | - | panB | OKGIIK_03885 | 0.27 | +2.0 |
854,134 | + | +1.2 | |||
854,134 | + | +0.4 | |||
854,134 | + | +0.4 | |||
854,135 | - | +0.9 | |||
854,135 | - | +0.1 | |||
854,135 | - | -0.8 | |||
854,135 | - | -0.2 | |||
854,135 | - | +1.4 | |||
854,325 | + | panC | OKGIIK_03890 | 0.24 | +1.4 |
854,325 | + | panC | OKGIIK_03890 | 0.24 | +1.0 |
854,326 | - | panC | OKGIIK_03890 | 0.24 | -0.4 |
854,418 | + | panC | OKGIIK_03890 | 0.35 | +0.4 |
854,418 | + | panC | OKGIIK_03890 | 0.35 | +1.3 |
854,698 | - | panC | OKGIIK_03890 | 0.68 | +0.6 |
854,980 | + | -0.4 | |||
854,981 | - | +0.4 | |||
854,995 | - | -1.3 | |||
855,065 | + | +3.1 | |||
855,065 | + | -0.2 | |||
855,066 | - | +0.9 | |||
855,066 | - | +0.8 | |||
855,136 | - | panD | OKGIIK_03895 | 0.16 | +0.5 |
855,193 | - | panD | OKGIIK_03895 | 0.31 | +2.4 |
855,244 | - | panD | OKGIIK_03895 | 0.44 | +1.1 |
855,390 | + | panD | OKGIIK_03895 | 0.81 | +0.4 |
855,391 | - | panD | OKGIIK_03895 | 0.81 | +2.0 |
855,472 | + | -0.9 | |||
855,472 | + | -1.2 | |||
855,473 | - | +2.1 | |||
855,473 | - | +0.1 | |||
855,473 | - | +1.2 | |||
855,473 | - | -1.5 | |||
855,631 | - | queG | OKGIIK_03900 | 0.14 | -3.3 |
855,631 | - | queG | OKGIIK_03900 | 0.14 | -0.9 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +0.1 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -1.6 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -1.6 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.4 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.4 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.2 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +0.2 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -1.4 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.4 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +0.5 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +0.3 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +1.4 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +2.1 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.7 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +1.0 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -1.6 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.4 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -1.2 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -0.2 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.4 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | +0.3 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | +0.0 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | -0.6 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | -0.6 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.4 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +1.0 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.6 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.5 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.4 |
855,911 | + | queG | OKGIIK_03900 | 0.39 | +1.8 |
855,911 | + | queG | OKGIIK_03900 | 0.39 | +1.4 |
855,912 | - | queG | OKGIIK_03900 | 0.39 | +1.1 |
855,912 | - | queG | OKGIIK_03900 | 0.39 | -0.3 |
Or see this region's nucleotide sequence