Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03890

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolK and panB are separated by 55 nucleotidespanB and panC are separated by 16 nucleotidespanC and panD are separated by 102 nucleotidespanD and queG are separated by 17 nucleotides OKGIIK_03880: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 852,742 to 853,221 folK OKGIIK_03885: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 853,277 to 854,107 panB OKGIIK_03890: panC - pantoate--beta-alanine ligase, at 854,124 to 854,969 panC OKGIIK_03895: panD - aspartate 1-decarboxylase, at 855,072 to 855,464 panD OKGIIK_03900: queG - tRNA epoxyqueuosine(34) reductase QueG, at 855,482 to 856,576 queG Position (kb) 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 853.280 kb on + strandat 853.280 kb on + strandat 853.280 kb on + strandat 853.281 kb on - strandat 853.281 kb on - strandat 853.380 kb on - strand, within panBat 853.498 kb on + strand, within panBat 853.499 kb on - strand, within panBat 853.499 kb on - strand, within panBat 853.499 kb on - strand, within panBat 853.499 kb on - strand, within panBat 854.134 kb on + strandat 854.134 kb on + strandat 854.134 kb on + strandat 854.135 kb on - strandat 854.135 kb on - strandat 854.135 kb on - strandat 854.135 kb on - strandat 854.135 kb on - strandat 854.325 kb on + strand, within panCat 854.325 kb on + strand, within panCat 854.326 kb on - strand, within panCat 854.418 kb on + strand, within panCat 854.418 kb on + strand, within panCat 854.698 kb on - strand, within panCat 854.980 kb on + strandat 854.981 kb on - strandat 854.995 kb on - strandat 855.065 kb on + strandat 855.065 kb on + strandat 855.066 kb on - strandat 855.066 kb on - strandat 855.136 kb on - strand, within panDat 855.193 kb on - strand, within panDat 855.244 kb on - strand, within panDat 855.390 kb on + strand, within panDat 855.391 kb on - strand, within panDat 855.472 kb on + strandat 855.472 kb on + strandat 855.473 kb on - strandat 855.473 kb on - strandat 855.473 kb on - strandat 855.473 kb on - strandat 855.631 kb on - strand, within queGat 855.631 kb on - strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.782 kb on + strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.783 kb on - strand, within queGat 855.873 kb on + strand, within queGat 855.873 kb on + strand, within queGat 855.873 kb on + strand, within queGat 855.873 kb on + strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.874 kb on - strand, within queGat 855.911 kb on + strand, within queGat 855.911 kb on + strand, within queGat 855.912 kb on - strand, within queGat 855.912 kb on - strand, within queG

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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853,280 + +2.1
853,280 + +0.8
853,280 + -0.5
853,281 - +1.4
853,281 - +2.3
853,380 - panB OKGIIK_03885 0.12 +2.4
853,498 + panB OKGIIK_03885 0.27 +1.4
853,499 - panB OKGIIK_03885 0.27 +0.1
853,499 - panB OKGIIK_03885 0.27 +2.8
853,499 - panB OKGIIK_03885 0.27 +0.4
853,499 - panB OKGIIK_03885 0.27 +2.0
854,134 + +1.2
854,134 + +0.4
854,134 + +0.4
854,135 - +0.9
854,135 - +0.1
854,135 - -0.8
854,135 - -0.2
854,135 - +1.4
854,325 + panC OKGIIK_03890 0.24 +1.4
854,325 + panC OKGIIK_03890 0.24 +1.0
854,326 - panC OKGIIK_03890 0.24 -0.4
854,418 + panC OKGIIK_03890 0.35 +0.4
854,418 + panC OKGIIK_03890 0.35 +1.3
854,698 - panC OKGIIK_03890 0.68 +0.6
854,980 + -0.4
854,981 - +0.4
854,995 - -1.3
855,065 + +3.1
855,065 + -0.2
855,066 - +0.9
855,066 - +0.8
855,136 - panD OKGIIK_03895 0.16 +0.5
855,193 - panD OKGIIK_03895 0.31 +2.4
855,244 - panD OKGIIK_03895 0.44 +1.1
855,390 + panD OKGIIK_03895 0.81 +0.4
855,391 - panD OKGIIK_03895 0.81 +2.0
855,472 + -0.9
855,472 + -1.2
855,473 - +2.1
855,473 - +0.1
855,473 - +1.2
855,473 - -1.5
855,631 - queG OKGIIK_03900 0.14 -3.3
855,631 - queG OKGIIK_03900 0.14 -0.9
855,782 + queG OKGIIK_03900 0.27 +0.1
855,782 + queG OKGIIK_03900 0.27 -1.6
855,782 + queG OKGIIK_03900 0.27 -1.6
855,782 + queG OKGIIK_03900 0.27 -0.4
855,782 + queG OKGIIK_03900 0.27 -0.4
855,782 + queG OKGIIK_03900 0.27 -0.2
855,782 + queG OKGIIK_03900 0.27 +0.2
855,782 + queG OKGIIK_03900 0.27 -1.4
855,782 + queG OKGIIK_03900 0.27 -0.4
855,782 + queG OKGIIK_03900 0.27 +0.5
855,782 + queG OKGIIK_03900 0.27 +0.3
855,783 - queG OKGIIK_03900 0.27 +1.4
855,783 - queG OKGIIK_03900 0.27 +2.1
855,783 - queG OKGIIK_03900 0.27 +0.7
855,783 - queG OKGIIK_03900 0.27 +1.0
855,783 - queG OKGIIK_03900 0.27 -1.6
855,783 - queG OKGIIK_03900 0.27 +0.4
855,783 - queG OKGIIK_03900 0.27 -1.2
855,783 - queG OKGIIK_03900 0.27 -0.2
855,783 - queG OKGIIK_03900 0.27 +0.4
855,873 + queG OKGIIK_03900 0.36 +0.3
855,873 + queG OKGIIK_03900 0.36 +0.0
855,873 + queG OKGIIK_03900 0.36 -0.6
855,873 + queG OKGIIK_03900 0.36 -0.6
855,874 - queG OKGIIK_03900 0.36 +0.4
855,874 - queG OKGIIK_03900 0.36 +1.0
855,874 - queG OKGIIK_03900 0.36 +0.1
855,874 - queG OKGIIK_03900 0.36 +0.1
855,874 - queG OKGIIK_03900 0.36 +0.1
855,874 - queG OKGIIK_03900 0.36 -0.6
855,874 - queG OKGIIK_03900 0.36 +0.5
855,874 - queG OKGIIK_03900 0.36 -0.4
855,911 + queG OKGIIK_03900 0.39 +1.8
855,911 + queG OKGIIK_03900 0.39 +1.4
855,912 - queG OKGIIK_03900 0.39 +1.1
855,912 - queG OKGIIK_03900 0.39 -0.3

Or see this region's nucleotide sequence