Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03860 and OKGIIK_03865 are separated by 65 nucleotides OKGIIK_03865 and Glu_trna are separated by 150 nucleotides Glu_trna and pcnB are separated by 189 nucleotides
OKGIIK_03860: OKGIIK_03860 - hypothetical protein, at 850,001 to 850,591
_03860
OKGIIK_03865: OKGIIK_03865 - ferredoxin, at 850,657 to 850,980
_03865
OKGIIK_03870: Glu_trna - tRNA-Glu, at 851,131 to 851,206
_trna
OKGIIK_03875: pcnB - tRNA nucleotidyltransferase/poly(A) polymerase, at 851,396 to 852,745
pcnB
Position (kb) 851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 850.286 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.361 kb on + strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.362 kb on - strand, within OKGIIK_03860 at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.814 kb on + strand, within OKGIIK_03865 at 850.940 kb on + strand, within OKGIIK_03865 at 850.941 kb on - strand, within OKGIIK_03865 at 850.941 kb on - strand, within OKGIIK_03865 at 850.941 kb on - strand, within OKGIIK_03865 at 850.941 kb on - strand, within OKGIIK_03865 at 850.997 kb on + strand at 850.997 kb on + strand at 850.997 kb on + strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 850.998 kb on - strand at 851.052 kb on + strand at 851.052 kb on + strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.053 kb on - strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.083 kb on + strand at 851.084 kb on + strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.084 kb on - strand at 851.141 kb on + strand, within Glu_trna at 851.186 kb on - strand, within Glu_trna at 851.193 kb on + strand, within Glu_trna at 851.209 kb on + strand at 851.209 kb on + strand at 851.209 kb on + strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.210 kb on - strand at 851.226 kb on + strand at 851.226 kb on + strand at 851.226 kb on + strand at 851.227 kb on - strand at 851.227 kb on - strand at 851.227 kb on - strand at 851.227 kb on - strand at 851.229 kb on + strand at 851.229 kb on + strand at 851.229 kb on + strand at 851.230 kb on - strand at 851.230 kb on - strand at 851.230 kb on - strand at 851.230 kb on - strand at 851.230 kb on - strand at 851.231 kb on + strand at 851.232 kb on - strand at 851.261 kb on - strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.350 kb on + strand at 851.351 kb on - strand at 851.351 kb on - strand at 851.351 kb on - strand at 851.351 kb on - strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.352 kb on + strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.353 kb on - strand at 851.504 kb on + strand at 851.504 kb on + strand at 851.504 kb on + strand at 851.534 kb on + strand, within pcnB at 851.534 kb on + strand, within pcnB at 851.534 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.843 kb on + strand, within pcnB at 851.846 kb on + strand, within pcnB at 851.846 kb on + strand, within pcnB at 851.876 kb on + strand, within pcnB at 851.876 kb on + strand, within pcnB at 851.876 kb on + strand, within pcnB at 851.910 kb on + strand, within pcnB at 851.910 kb on + strand, within pcnB at 851.910 kb on + strand, within pcnB at 851.911 kb on - strand, within pcnB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 850,286 + OKGIIK_03860 0.48 -0.4 850,361 + OKGIIK_03860 0.61 -0.6 850,361 + OKGIIK_03860 0.61 -0.2 850,361 + OKGIIK_03860 0.61 -0.8 850,361 + OKGIIK_03860 0.61 -0.9 850,361 + OKGIIK_03860 0.61 -1.4 850,361 + OKGIIK_03860 0.61 -0.3 850,361 + OKGIIK_03860 0.61 -2.3 850,361 + OKGIIK_03860 0.61 -2.6 850,361 + OKGIIK_03860 0.61 +0.7 850,361 + OKGIIK_03860 0.61 -0.6 850,361 + OKGIIK_03860 0.61 -1.7 850,361 + OKGIIK_03860 0.61 -0.6 850,361 + OKGIIK_03860 0.61 -0.2 850,361 + OKGIIK_03860 0.61 +0.3 850,361 + OKGIIK_03860 0.61 +0.4 850,361 + OKGIIK_03860 0.61 +0.4 850,361 + OKGIIK_03860 0.61 +0.4 850,361 + OKGIIK_03860 0.61 -1.8 850,361 + OKGIIK_03860 0.61 -1.1 850,361 + OKGIIK_03860 0.61 -0.9 850,361 + OKGIIK_03860 0.61 +0.4 850,361 + OKGIIK_03860 0.61 +0.8 850,361 + OKGIIK_03860 0.61 +1.0 850,362 - OKGIIK_03860 0.61 -0.4 850,362 - OKGIIK_03860 0.61 -1.7 850,362 - OKGIIK_03860 0.61 -0.2 850,362 - OKGIIK_03860 0.61 -0.8 850,362 - OKGIIK_03860 0.61 -0.6 850,362 - OKGIIK_03860 0.61 -0.6 850,362 - OKGIIK_03860 0.61 +0.5 850,565 - -0.8 850,565 - -1.1 850,565 - +2.0 850,565 - +1.1 850,565 - +0.4 850,565 - -0.2 850,565 - +0.1 850,565 - +0.1 850,565 - +1.1 850,814 + OKGIIK_03865 0.48 +1.4 850,940 + OKGIIK_03865 0.87 -0.3 850,941 - OKGIIK_03865 0.88 +0.5 850,941 - OKGIIK_03865 0.88 -1.1 850,941 - OKGIIK_03865 0.88 +0.4 850,941 - OKGIIK_03865 0.88 +2.4 850,997 + +0.4 850,997 + -0.0 850,997 + -0.4 850,998 - -1.5 850,998 - -3.7 850,998 - -0.4 850,998 - -0.1 850,998 - -1.3 850,998 - -1.3 850,998 - -0.8 850,998 - -0.2 850,998 - -0.6 851,052 + -0.9 851,052 + +0.4 851,053 - +1.1 851,053 - +0.1 851,053 - -1.4 851,053 - -1.6 851,053 - -0.9 851,053 - +1.2 851,053 - +0.9 851,053 - +0.4 851,053 - -0.9 851,053 - +0.8 851,053 - +0.8 851,057 + +1.4 851,057 + +0.1 851,057 + -0.9 851,058 - -0.2 851,058 - -0.3 851,058 - -0.9 851,083 + +0.1 851,083 + +0.4 851,083 + -1.5 851,083 + +1.0 851,083 + -0.5 851,083 + +1.7 851,083 + +2.0 851,084 + -1.5 851,084 - +0.7 851,084 - +2.4 851,084 - +0.4 851,084 - +0.1 851,084 - -0.1 851,084 - +1.1 851,084 - +0.4 851,084 - -0.7 851,084 - -1.2 851,084 - +0.1 851,084 - +0.8 851,084 - -1.9 851,084 - -0.7 851,084 - +0.7 851,084 - +0.1 851,084 - -0.8 851,084 - +1.1 851,141 + Glu_trna OKGIIK_03870 0.13 +1.4 851,186 - Glu_trna OKGIIK_03870 0.72 +0.2 851,193 + Glu_trna OKGIIK_03870 0.82 +0.5 851,209 + -1.4 851,209 + +1.6 851,209 + +0.7 851,210 - +1.0 851,210 - +0.3 851,210 - +0.4 851,210 - -1.5 851,210 - +0.7 851,210 - -0.6 851,210 - +0.3 851,210 - +1.1 851,226 + +1.1 851,226 + +0.1 851,226 + +0.1 851,227 - -1.1 851,227 - -0.6 851,227 - +0.9 851,227 - +0.6 851,229 + -0.8 851,229 + -0.6 851,229 + +1.1 851,230 - +0.2 851,230 - -0.8 851,230 - -1.1 851,230 - +0.9 851,230 - +0.4 851,231 + +1.1 851,232 - +0.1 851,261 - -2.0 851,350 + -0.2 851,350 + -0.3 851,350 + -0.5 851,350 + +0.5 851,350 + -1.6 851,350 + -0.7 851,350 + -2.1 851,350 + -1.6 851,351 - +0.0 851,351 - -0.9 851,351 - -1.4 851,351 - +1.0 851,352 + +0.4 851,352 + -1.2 851,352 + -0.6 851,352 + -1.8 851,352 + -0.1 851,352 + -0.4 851,352 + -0.3 851,352 + -1.5 851,352 + -0.6 851,352 + +0.4 851,352 + -0.0 851,352 + +1.1 851,352 + -1.4 851,352 + +0.7 851,352 + -1.3 851,352 + -1.5 851,352 + -0.3 851,352 + -0.4 851,353 - +0.9 851,353 - +0.4 851,353 - +0.3 851,353 - -0.1 851,353 - -0.3 851,353 - +0.5 851,353 - -2.1 851,353 - -1.3 851,353 - +0.1 851,504 + +1.2 851,504 + +3.2 851,504 + +2.8 851,534 + pcnB OKGIIK_03875 0.10 +0.4 851,534 + pcnB OKGIIK_03875 0.10 +2.4 851,534 + pcnB OKGIIK_03875 0.10 +3.4 851,843 + pcnB OKGIIK_03875 0.33 +1.4 851,843 + pcnB OKGIIK_03875 0.33 +1.9 851,843 + pcnB OKGIIK_03875 0.33 +1.0 851,843 + pcnB OKGIIK_03875 0.33 +0.1 851,843 + pcnB OKGIIK_03875 0.33 +3.3 851,843 + pcnB OKGIIK_03875 0.33 +2.6 851,843 + pcnB OKGIIK_03875 0.33 +2.4 851,846 + pcnB OKGIIK_03875 0.33 +2.4 851,846 + pcnB OKGIIK_03875 0.33 +0.4 851,876 + pcnB OKGIIK_03875 0.36 +2.4 851,876 + pcnB OKGIIK_03875 0.36 +2.8 851,876 + pcnB OKGIIK_03875 0.36 +1.1 851,910 + pcnB OKGIIK_03875 0.38 +0.4 851,910 + pcnB OKGIIK_03875 0.38 +2.2 851,910 + pcnB OKGIIK_03875 0.38 +4.0 851,911 - pcnB OKGIIK_03875 0.38 +1.5
Or see this region's nucleotide sequence