Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03685 and OKGIIK_03690 are separated by 36 nucleotides OKGIIK_03690 and OKGIIK_03695 are separated by 98 nucleotides OKGIIK_03695 and katE are separated by 9 nucleotides
OKGIIK_03685: OKGIIK_03685 - Histidine kinase, at 812,280 to 812,867
_03685
OKGIIK_03690: OKGIIK_03690 - RNA-binding protein, at 812,904 to 813,302
_03690
OKGIIK_03695: OKGIIK_03695 - Histidine kinase, at 813,401 to 814,063
_03695
OKGIIK_03700: katE - catalase, at 814,073 to 815,515
katE
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1
2 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.893 kb on + strand at 812.893 kb on + strand at 812.894 kb on - strand at 813.165 kb on + strand, within OKGIIK_03690 at 813.340 kb on + strand at 813.340 kb on + strand at 813.340 kb on + strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.575 kb on + strand, within OKGIIK_03695 at 813.575 kb on + strand, within OKGIIK_03695 at 813.576 kb on - strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 814.113 kb on + strand at 814.193 kb on - strand at 814.258 kb on - strand, within katE at 814.368 kb on + strand, within katE at 814.368 kb on + strand, within katE at 814.368 kb on + strand, within katE at 814.368 kb on + strand, within katE at 814.368 kb on + strand, within katE at 814.368 kb on + strand, within katE at 814.369 kb on - strand, within katE at 814.369 kb on - strand, within katE at 814.369 kb on - strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.422 kb on + strand, within katE at 814.423 kb on - strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.602 kb on + strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.603 kb on - strand, within katE at 814.654 kb on - strand, within katE at 814.654 kb on - strand, within katE at 814.695 kb on + strand, within katE at 814.695 kb on + strand, within katE at 814.695 kb on + strand, within katE at 814.695 kb on + strand, within katE at 814.696 kb on - strand, within katE at 814.696 kb on - strand, within katE at 814.696 kb on - strand, within katE at 814.696 kb on - strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.737 kb on + strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.738 kb on - strand, within katE at 814.779 kb on + strand, within katE at 814.779 kb on + strand, within katE at 814.779 kb on + strand, within katE at 814.779 kb on + strand, within katE at 814.779 kb on + strand, within katE at 814.780 kb on - strand, within katE at 814.780 kb on - strand, within katE at 814.780 kb on - strand, within katE at 814.780 kb on - strand, within katE at 814.780 kb on - strand, within katE at 814.780 kb on - strand, within katE at 814.887 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.917 kb on + strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 814.918 kb on - strand, within katE at 815.022 kb on + strand, within katE at 815.022 kb on + strand, within katE at 815.022 kb on + strand, within katE at 815.023 kb on - strand, within katE at 815.023 kb on - strand, within katE at 815.023 kb on - strand, within katE at 815.023 kb on - strand, within katE
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 812,634 + OKGIIK_03685 0.60 +0.9 812,634 + OKGIIK_03685 0.60 +0.4 812,634 + OKGIIK_03685 0.60 -0.1 812,893 + +0.4 812,893 + -0.0 812,894 - +0.2 813,165 + OKGIIK_03690 0.65 +0.1 813,340 + -0.4 813,340 + -2.4 813,340 + +0.4 813,341 - +0.7 813,341 - +0.4 813,341 - -0.6 813,341 - +0.8 813,575 + OKGIIK_03695 0.26 +0.4 813,575 + OKGIIK_03695 0.26 +0.0 813,576 - OKGIIK_03695 0.26 -0.4 813,773 + OKGIIK_03695 0.56 +1.0 813,773 + OKGIIK_03695 0.56 +0.1 813,773 + OKGIIK_03695 0.56 +0.8 813,773 + OKGIIK_03695 0.56 -0.4 813,773 + OKGIIK_03695 0.56 -0.4 813,773 + OKGIIK_03695 0.56 -0.2 813,774 - OKGIIK_03695 0.56 -0.1 813,774 - OKGIIK_03695 0.56 +2.4 813,774 - OKGIIK_03695 0.56 +0.4 813,774 - OKGIIK_03695 0.56 +0.6 813,774 - OKGIIK_03695 0.56 +0.0 813,833 + OKGIIK_03695 0.65 +0.1 813,833 + OKGIIK_03695 0.65 +0.4 813,833 + OKGIIK_03695 0.65 -0.4 813,833 + OKGIIK_03695 0.65 +0.1 813,833 + OKGIIK_03695 0.65 +0.0 813,833 + OKGIIK_03695 0.65 +1.1 813,833 + OKGIIK_03695 0.65 -0.8 813,834 - OKGIIK_03695 0.65 +0.4 813,834 - OKGIIK_03695 0.65 +0.2 813,834 - OKGIIK_03695 0.65 -0.7 813,834 - OKGIIK_03695 0.65 +1.1 813,834 - OKGIIK_03695 0.65 +1.4 813,834 - OKGIIK_03695 0.65 -0.2 813,834 - OKGIIK_03695 0.65 -0.2 813,834 - OKGIIK_03695 0.65 +1.5 813,834 - OKGIIK_03695 0.65 +0.6 814,113 + -1.1 814,193 - -1.0 814,258 - katE OKGIIK_03700 0.13 +0.0 814,368 + katE OKGIIK_03700 0.20 -0.6 814,368 + katE OKGIIK_03700 0.20 +0.8 814,368 + katE OKGIIK_03700 0.20 +0.2 814,368 + katE OKGIIK_03700 0.20 +0.8 814,368 + katE OKGIIK_03700 0.20 -0.5 814,368 + katE OKGIIK_03700 0.20 -0.1 814,369 - katE OKGIIK_03700 0.21 -1.3 814,369 - katE OKGIIK_03700 0.21 -1.0 814,369 - katE OKGIIK_03700 0.21 -1.7 814,422 + katE OKGIIK_03700 0.24 +0.4 814,422 + katE OKGIIK_03700 0.24 -1.9 814,422 + katE OKGIIK_03700 0.24 -1.2 814,422 + katE OKGIIK_03700 0.24 +0.3 814,422 + katE OKGIIK_03700 0.24 -0.1 814,422 + katE OKGIIK_03700 0.24 -1.0 814,422 + katE OKGIIK_03700 0.24 -0.5 814,422 + katE OKGIIK_03700 0.24 -0.9 814,422 + katE OKGIIK_03700 0.24 +0.4 814,423 - katE OKGIIK_03700 0.24 +0.0 814,602 + katE OKGIIK_03700 0.37 +0.2 814,602 + katE OKGIIK_03700 0.37 -0.3 814,602 + katE OKGIIK_03700 0.37 +0.1 814,602 + katE OKGIIK_03700 0.37 +0.4 814,602 + katE OKGIIK_03700 0.37 -1.1 814,602 + katE OKGIIK_03700 0.37 +1.0 814,602 + katE OKGIIK_03700 0.37 -0.7 814,602 + katE OKGIIK_03700 0.37 +1.3 814,602 + katE OKGIIK_03700 0.37 +0.6 814,602 + katE OKGIIK_03700 0.37 +0.5 814,602 + katE OKGIIK_03700 0.37 -0.4 814,602 + katE OKGIIK_03700 0.37 +1.0 814,602 + katE OKGIIK_03700 0.37 -2.0 814,602 + katE OKGIIK_03700 0.37 -1.5 814,603 - katE OKGIIK_03700 0.37 +0.0 814,603 - katE OKGIIK_03700 0.37 -0.3 814,603 - katE OKGIIK_03700 0.37 -0.8 814,603 - katE OKGIIK_03700 0.37 +0.6 814,603 - katE OKGIIK_03700 0.37 +0.4 814,603 - katE OKGIIK_03700 0.37 -0.5 814,603 - katE OKGIIK_03700 0.37 +1.4 814,603 - katE OKGIIK_03700 0.37 -0.7 814,654 - katE OKGIIK_03700 0.40 -0.5 814,654 - katE OKGIIK_03700 0.40 -0.0 814,695 + katE OKGIIK_03700 0.43 -0.6 814,695 + katE OKGIIK_03700 0.43 -0.3 814,695 + katE OKGIIK_03700 0.43 +1.2 814,695 + katE OKGIIK_03700 0.43 +1.6 814,696 - katE OKGIIK_03700 0.43 +0.4 814,696 - katE OKGIIK_03700 0.43 +0.6 814,696 - katE OKGIIK_03700 0.43 -0.2 814,696 - katE OKGIIK_03700 0.43 -0.9 814,737 + katE OKGIIK_03700 0.46 +0.2 814,737 + katE OKGIIK_03700 0.46 +0.4 814,737 + katE OKGIIK_03700 0.46 -1.3 814,737 + katE OKGIIK_03700 0.46 +0.6 814,737 + katE OKGIIK_03700 0.46 -0.0 814,737 + katE OKGIIK_03700 0.46 +0.8 814,737 + katE OKGIIK_03700 0.46 -0.2 814,737 + katE OKGIIK_03700 0.46 -1.0 814,737 + katE OKGIIK_03700 0.46 -0.8 814,737 + katE OKGIIK_03700 0.46 -0.8 814,737 + katE OKGIIK_03700 0.46 -0.8 814,737 + katE OKGIIK_03700 0.46 -1.9 814,737 + katE OKGIIK_03700 0.46 -1.2 814,737 + katE OKGIIK_03700 0.46 +0.8 814,737 + katE OKGIIK_03700 0.46 -1.3 814,737 + katE OKGIIK_03700 0.46 -1.5 814,737 + katE OKGIIK_03700 0.46 -1.1 814,737 + katE OKGIIK_03700 0.46 +2.1 814,737 + katE OKGIIK_03700 0.46 -1.5 814,737 + katE OKGIIK_03700 0.46 -0.9 814,737 + katE OKGIIK_03700 0.46 -0.6 814,737 + katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 -1.5 814,738 - katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 +0.7 814,738 - katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 +1.0 814,738 - katE OKGIIK_03700 0.46 -1.6 814,738 - katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 +0.8 814,738 - katE OKGIIK_03700 0.46 -1.9 814,738 - katE OKGIIK_03700 0.46 -0.2 814,738 - katE OKGIIK_03700 0.46 -0.6 814,738 - katE OKGIIK_03700 0.46 +0.0 814,738 - katE OKGIIK_03700 0.46 -1.0 814,738 - katE OKGIIK_03700 0.46 -2.3 814,738 - katE OKGIIK_03700 0.46 +0.1 814,738 - katE OKGIIK_03700 0.46 +0.0 814,738 - katE OKGIIK_03700 0.46 +0.1 814,738 - katE OKGIIK_03700 0.46 -1.9 814,738 - katE OKGIIK_03700 0.46 -1.9 814,738 - katE OKGIIK_03700 0.46 +0.4 814,738 - katE OKGIIK_03700 0.46 -0.4 814,738 - katE OKGIIK_03700 0.46 +0.3 814,738 - katE OKGIIK_03700 0.46 +0.0 814,738 - katE OKGIIK_03700 0.46 +1.0 814,738 - katE OKGIIK_03700 0.46 +0.1 814,738 - katE OKGIIK_03700 0.46 +1.6 814,738 - katE OKGIIK_03700 0.46 +0.8 814,738 - katE OKGIIK_03700 0.46 +2.1 814,738 - katE OKGIIK_03700 0.46 -0.0 814,738 - katE OKGIIK_03700 0.46 -1.1 814,779 + katE OKGIIK_03700 0.49 -0.2 814,779 + katE OKGIIK_03700 0.49 +0.4 814,779 + katE OKGIIK_03700 0.49 +0.8 814,779 + katE OKGIIK_03700 0.49 +0.2 814,779 + katE OKGIIK_03700 0.49 +0.4 814,780 - katE OKGIIK_03700 0.49 +0.5 814,780 - katE OKGIIK_03700 0.49 -1.2 814,780 - katE OKGIIK_03700 0.49 -1.2 814,780 - katE OKGIIK_03700 0.49 +0.4 814,780 - katE OKGIIK_03700 0.49 +0.9 814,780 - katE OKGIIK_03700 0.49 -0.6 814,887 + katE OKGIIK_03700 0.56 -2.1 814,917 + katE OKGIIK_03700 0.58 -0.6 814,917 + katE OKGIIK_03700 0.58 -0.7 814,917 + katE OKGIIK_03700 0.58 +0.2 814,917 + katE OKGIIK_03700 0.58 -0.4 814,917 + katE OKGIIK_03700 0.58 +0.8 814,917 + katE OKGIIK_03700 0.58 -0.2 814,917 + katE OKGIIK_03700 0.58 -1.7 814,917 + katE OKGIIK_03700 0.58 -1.0 814,917 + katE OKGIIK_03700 0.58 -1.0 814,917 + katE OKGIIK_03700 0.58 +0.9 814,917 + katE OKGIIK_03700 0.58 -1.2 814,917 + katE OKGIIK_03700 0.58 -0.2 814,917 + katE OKGIIK_03700 0.58 -2.0 814,917 + katE OKGIIK_03700 0.58 +2.4 814,918 - katE OKGIIK_03700 0.59 -1.4 814,918 - katE OKGIIK_03700 0.59 -2.0 814,918 - katE OKGIIK_03700 0.59 -1.1 814,918 - katE OKGIIK_03700 0.59 -0.6 814,918 - katE OKGIIK_03700 0.59 +0.7 814,918 - katE OKGIIK_03700 0.59 +1.0 814,918 - katE OKGIIK_03700 0.59 -0.2 814,918 - katE OKGIIK_03700 0.59 +2.6 814,918 - katE OKGIIK_03700 0.59 -0.4 814,918 - katE OKGIIK_03700 0.59 +0.1 815,022 + katE OKGIIK_03700 0.66 -1.0 815,022 + katE OKGIIK_03700 0.66 -0.5 815,022 + katE OKGIIK_03700 0.66 +1.0 815,023 - katE OKGIIK_03700 0.66 +0.2 815,023 - katE OKGIIK_03700 0.66 -0.2 815,023 - katE OKGIIK_03700 0.66 +0.1 815,023 - katE OKGIIK_03700 0.66 -1.7
Or see this region's nucleotide sequence