Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03280 and yciW are separated by 34 nucleotides yciW and OKGIIK_03290 are separated by 131 nucleotides OKGIIK_03290 and OKGIIK_03295 overlap by 35 nucleotides OKGIIK_03295 and minE are separated by 91 nucleotides minE and minD are separated by 5 nucleotides
OKGIIK_03280: OKGIIK_03280 - Carboxyvinyl-carboxyphosphonate phosphorylmutase, at 740,327 to 741,166
_03280
OKGIIK_03285: yciW - carboxymuconolactone decarboxylase, at 741,201 to 741,662
yciW
OKGIIK_03290: OKGIIK_03290 - Cation transport regulator, at 741,794 to 742,072
_03290
OKGIIK_03295: OKGIIK_03295 - hypothetical protein, at 742,038 to 742,541
_03295
OKGIIK_03300: minE - cell division topological specificity factor MinE, at 742,633 to 742,929
minE
OKGIIK_03305: minD - septum site-determining protein MinD, at 742,935 to 743,750
minD
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.867 kb on + strand, within OKGIIK_03280 at 740.894 kb on + strand, within OKGIIK_03280 at 740.895 kb on - strand, within OKGIIK_03280 at 740.895 kb on - strand, within OKGIIK_03280 at 741.001 kb on + strand, within OKGIIK_03280 at 741.002 kb on - strand, within OKGIIK_03280 at 741.002 kb on - strand, within OKGIIK_03280 at 741.131 kb on + strand at 741.131 kb on + strand at 741.131 kb on + strand at 741.132 kb on - strand at 741.212 kb on + strand at 741.212 kb on + strand at 741.213 kb on - strand at 741.213 kb on - strand at 741.220 kb on - strand at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.270 kb on + strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.271 kb on - strand, within yciW at 741.348 kb on + strand, within yciW at 741.349 kb on - strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.412 kb on + strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.413 kb on - strand, within yciW at 741.441 kb on + strand, within yciW at 741.441 kb on + strand, within yciW at 741.522 kb on + strand, within yciW at 741.522 kb on + strand, within yciW at 741.522 kb on + strand, within yciW at 741.522 kb on + strand, within yciW at 741.522 kb on + strand, within yciW at 741.523 kb on - strand, within yciW at 741.523 kb on - strand, within yciW at 741.639 kb on + strand at 741.639 kb on + strand at 741.639 kb on + strand at 741.639 kb on + strand at 741.640 kb on - strand at 741.800 kb on + strand at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.866 kb on + strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.867 kb on - strand, within OKGIIK_03290 at 741.899 kb on + strand, within OKGIIK_03290 at 741.899 kb on + strand, within OKGIIK_03290 at 741.900 kb on - strand, within OKGIIK_03290 at 741.900 kb on - strand, within OKGIIK_03290 at 741.900 kb on - strand, within OKGIIK_03290 at 741.952 kb on + strand, within OKGIIK_03290 at 741.953 kb on - strand, within OKGIIK_03290 at 741.953 kb on - strand, within OKGIIK_03290 at 741.953 kb on - strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.983 kb on + strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 741.984 kb on - strand, within OKGIIK_03290 at 742.056 kb on + strand at 742.057 kb on - strand at 742.138 kb on + strand, within OKGIIK_03295 at 742.138 kb on + strand, within OKGIIK_03295 at 742.139 kb on - strand, within OKGIIK_03295 at 742.349 kb on - strand, within OKGIIK_03295
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 740,867 + OKGIIK_03280 0.64 +0.6 740,867 + OKGIIK_03280 0.64 -1.9 740,867 + OKGIIK_03280 0.64 +0.1 740,867 + OKGIIK_03280 0.64 +0.2 740,867 + OKGIIK_03280 0.64 +0.3 740,867 + OKGIIK_03280 0.64 +0.2 740,867 + OKGIIK_03280 0.64 +0.2 740,867 + OKGIIK_03280 0.64 +0.9 740,894 + OKGIIK_03280 0.68 +0.0 740,895 - OKGIIK_03280 0.68 -0.7 740,895 - OKGIIK_03280 0.68 -1.6 741,001 + OKGIIK_03280 0.80 -0.9 741,002 - OKGIIK_03280 0.80 -0.7 741,002 - OKGIIK_03280 0.80 -1.5 741,131 + -0.5 741,131 + -1.2 741,131 + +0.0 741,132 - +0.8 741,212 + +0.0 741,212 + -0.1 741,213 - -1.2 741,213 - +2.3 741,220 - -0.8 741,270 + yciW OKGIIK_03285 0.15 +1.3 741,270 + yciW OKGIIK_03285 0.15 +0.8 741,270 + yciW OKGIIK_03285 0.15 +0.3 741,270 + yciW OKGIIK_03285 0.15 +0.3 741,270 + yciW OKGIIK_03285 0.15 -0.5 741,270 + yciW OKGIIK_03285 0.15 -0.3 741,270 + yciW OKGIIK_03285 0.15 +0.5 741,270 + yciW OKGIIK_03285 0.15 -0.2 741,270 + yciW OKGIIK_03285 0.15 -2.5 741,270 + yciW OKGIIK_03285 0.15 -0.4 741,270 + yciW OKGIIK_03285 0.15 -0.5 741,270 + yciW OKGIIK_03285 0.15 +1.0 741,270 + yciW OKGIIK_03285 0.15 +0.2 741,270 + yciW OKGIIK_03285 0.15 +1.0 741,270 + yciW OKGIIK_03285 0.15 -0.2 741,270 + yciW OKGIIK_03285 0.15 -0.3 741,270 + yciW OKGIIK_03285 0.15 +2.3 741,270 + yciW OKGIIK_03285 0.15 +0.2 741,270 + yciW OKGIIK_03285 0.15 +0.0 741,270 + yciW OKGIIK_03285 0.15 +1.3 741,270 + yciW OKGIIK_03285 0.15 -0.3 741,270 + yciW OKGIIK_03285 0.15 -0.5 741,270 + yciW OKGIIK_03285 0.15 +0.0 741,270 + yciW OKGIIK_03285 0.15 +0.0 741,270 + yciW OKGIIK_03285 0.15 -0.2 741,270 + yciW OKGIIK_03285 0.15 +0.6 741,270 + yciW OKGIIK_03285 0.15 -0.8 741,271 - yciW OKGIIK_03285 0.15 -0.8 741,271 - yciW OKGIIK_03285 0.15 +0.6 741,271 - yciW OKGIIK_03285 0.15 -1.5 741,271 - yciW OKGIIK_03285 0.15 +0.9 741,271 - yciW OKGIIK_03285 0.15 +0.8 741,271 - yciW OKGIIK_03285 0.15 -1.1 741,271 - yciW OKGIIK_03285 0.15 -1.8 741,271 - yciW OKGIIK_03285 0.15 -0.5 741,271 - yciW OKGIIK_03285 0.15 +0.5 741,271 - yciW OKGIIK_03285 0.15 -0.1 741,271 - yciW OKGIIK_03285 0.15 -0.7 741,271 - yciW OKGIIK_03285 0.15 +0.0 741,348 + yciW OKGIIK_03285 0.32 +0.8 741,349 - yciW OKGIIK_03285 0.32 +0.6 741,412 + yciW OKGIIK_03285 0.46 -1.0 741,412 + yciW OKGIIK_03285 0.46 +0.1 741,412 + yciW OKGIIK_03285 0.46 +0.3 741,412 + yciW OKGIIK_03285 0.46 -1.3 741,412 + yciW OKGIIK_03285 0.46 -0.5 741,412 + yciW OKGIIK_03285 0.46 -0.5 741,412 + yciW OKGIIK_03285 0.46 -1.8 741,412 + yciW OKGIIK_03285 0.46 +1.5 741,412 + yciW OKGIIK_03285 0.46 -0.2 741,413 - yciW OKGIIK_03285 0.46 -0.7 741,413 - yciW OKGIIK_03285 0.46 -0.7 741,413 - yciW OKGIIK_03285 0.46 -2.1 741,413 - yciW OKGIIK_03285 0.46 -0.7 741,413 - yciW OKGIIK_03285 0.46 -0.1 741,413 - yciW OKGIIK_03285 0.46 +0.5 741,413 - yciW OKGIIK_03285 0.46 -1.2 741,413 - yciW OKGIIK_03285 0.46 +1.3 741,441 + yciW OKGIIK_03285 0.52 +0.2 741,441 + yciW OKGIIK_03285 0.52 -1.4 741,522 + yciW OKGIIK_03285 0.69 -0.7 741,522 + yciW OKGIIK_03285 0.69 +1.0 741,522 + yciW OKGIIK_03285 0.69 -2.1 741,522 + yciW OKGIIK_03285 0.69 +0.7 741,522 + yciW OKGIIK_03285 0.69 -0.5 741,523 - yciW OKGIIK_03285 0.70 -1.6 741,523 - yciW OKGIIK_03285 0.70 -0.5 741,639 + -2.1 741,639 + -0.1 741,639 + +0.2 741,639 + -0.8 741,640 - -0.1 741,800 + -0.9 741,866 + OKGIIK_03290 0.26 -0.9 741,866 + OKGIIK_03290 0.26 +0.0 741,866 + OKGIIK_03290 0.26 +0.0 741,866 + OKGIIK_03290 0.26 -0.2 741,866 + OKGIIK_03290 0.26 +0.3 741,866 + OKGIIK_03290 0.26 -0.2 741,866 + OKGIIK_03290 0.26 -1.2 741,866 + OKGIIK_03290 0.26 +0.5 741,866 + OKGIIK_03290 0.26 -1.1 741,866 + OKGIIK_03290 0.26 -0.2 741,867 - OKGIIK_03290 0.26 +0.2 741,867 - OKGIIK_03290 0.26 +6.0 741,867 - OKGIIK_03290 0.26 +0.2 741,867 - OKGIIK_03290 0.26 +1.0 741,867 - OKGIIK_03290 0.26 -0.2 741,867 - OKGIIK_03290 0.26 -0.5 741,867 - OKGIIK_03290 0.26 +1.2 741,899 + OKGIIK_03290 0.38 -0.1 741,899 + OKGIIK_03290 0.38 +0.0 741,900 - OKGIIK_03290 0.38 +0.5 741,900 - OKGIIK_03290 0.38 -0.8 741,900 - OKGIIK_03290 0.38 -1.4 741,952 + OKGIIK_03290 0.57 -1.1 741,953 - OKGIIK_03290 0.57 -0.5 741,953 - OKGIIK_03290 0.57 -0.9 741,953 - OKGIIK_03290 0.57 +0.3 741,983 + OKGIIK_03290 0.68 -0.5 741,983 + OKGIIK_03290 0.68 +1.0 741,983 + OKGIIK_03290 0.68 +0.3 741,983 + OKGIIK_03290 0.68 -0.5 741,983 + OKGIIK_03290 0.68 +0.2 741,983 + OKGIIK_03290 0.68 -2.0 741,983 + OKGIIK_03290 0.68 +0.8 741,983 + OKGIIK_03290 0.68 -0.2 741,984 - OKGIIK_03290 0.68 -1.7 741,984 - OKGIIK_03290 0.68 +0.5 741,984 - OKGIIK_03290 0.68 -2.6 741,984 - OKGIIK_03290 0.68 -0.6 741,984 - OKGIIK_03290 0.68 -0.7 741,984 - OKGIIK_03290 0.68 +1.3 741,984 - OKGIIK_03290 0.68 +0.8 741,984 - OKGIIK_03290 0.68 +0.9 741,984 - OKGIIK_03290 0.68 -1.2 741,984 - OKGIIK_03290 0.68 +0.0 742,056 + -1.9 742,057 - +0.3 742,138 + OKGIIK_03295 0.20 +1.0 742,138 + OKGIIK_03295 0.20 +3.2 742,139 - OKGIIK_03295 0.20 -0.7 742,349 - OKGIIK_03295 0.62 -1.5
Or see this region's nucleotide sequence