Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03225

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntparC and OKGIIK_03225 are separated by 160 nucleotidesOKGIIK_03225 and OKGIIK_03230 are separated by 73 nucleotidesOKGIIK_03230 and OKGIIK_03235 are separated by 133 nucleotides OKGIIK_03220: parC - DNA topoisomerase IV subunit A, at 727,886 to 730,126 parC OKGIIK_03225: OKGIIK_03225 - Polysaccharide biosynthesis protein GumN, at 730,287 to 731,153 _03225 OKGIIK_03230: OKGIIK_03230 - hypothetical protein, at 731,227 to 731,472 _03230 OKGIIK_03235: OKGIIK_03235 - IS5 family transposase, at 731,606 to 732,649 _03235 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2at 730.202 kb on - strandat 730.202 kb on - strandat 730.202 kb on - strandat 730.268 kb on + strandat 730.268 kb on + strandat 730.268 kb on + strandat 730.453 kb on + strand, within OKGIIK_03225at 730.453 kb on + strand, within OKGIIK_03225at 730.453 kb on + strand, within OKGIIK_03225at 730.454 kb on - strand, within OKGIIK_03225at 730.454 kb on - strand, within OKGIIK_03225at 730.683 kb on + strand, within OKGIIK_03225at 730.684 kb on - strand, within OKGIIK_03225at 730.750 kb on - strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.954 kb on + strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 730.955 kb on - strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.044 kb on + strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.045 kb on - strand, within OKGIIK_03225at 731.071 kb on - strandat 731.375 kb on + strand, within OKGIIK_03230at 731.375 kb on + strand, within OKGIIK_03230at 731.375 kb on + strand, within OKGIIK_03230at 731.375 kb on + strand, within OKGIIK_03230at 731.375 kb on + strand, within OKGIIK_03230at 731.376 kb on - strand, within OKGIIK_03230at 731.376 kb on - strand, within OKGIIK_03230at 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.453 kb on + strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.454 kb on - strandat 731.466 kb on + strandat 731.467 kb on - strandat 731.467 kb on - strandat 731.467 kb on - strandat 731.467 kb on - strandat 731.483 kb on - strandat 731.483 kb on - strandat 731.483 kb on - strandat 731.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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730,202 - +2.0
730,202 - -1.4
730,202 - -1.0
730,268 + -1.4
730,268 + +0.3
730,268 + -0.7
730,453 + OKGIIK_03225 0.19 -0.7
730,453 + OKGIIK_03225 0.19 +0.3
730,453 + OKGIIK_03225 0.19 +1.1
730,454 - OKGIIK_03225 0.19 -0.3
730,454 - OKGIIK_03225 0.19 +0.3
730,683 + OKGIIK_03225 0.46 -1.5
730,684 - OKGIIK_03225 0.46 -1.0
730,750 - OKGIIK_03225 0.53 -1.1
730,954 + OKGIIK_03225 0.77 -1.6
730,954 + OKGIIK_03225 0.77 -1.0
730,954 + OKGIIK_03225 0.77 -1.3
730,954 + OKGIIK_03225 0.77 -0.8
730,954 + OKGIIK_03225 0.77 -0.7
730,954 + OKGIIK_03225 0.77 -0.7
730,954 + OKGIIK_03225 0.77 -0.5
730,954 + OKGIIK_03225 0.77 -0.7
730,955 - OKGIIK_03225 0.77 -1.6
730,955 - OKGIIK_03225 0.77 +0.6
730,955 - OKGIIK_03225 0.77 +0.0
730,955 - OKGIIK_03225 0.77 +0.3
730,955 - OKGIIK_03225 0.77 +0.2
730,955 - OKGIIK_03225 0.77 -1.6
730,955 - OKGIIK_03225 0.77 +1.2
731,044 + OKGIIK_03225 0.87 -0.8
731,044 + OKGIIK_03225 0.87 -0.5
731,044 + OKGIIK_03225 0.87 +0.4
731,044 + OKGIIK_03225 0.87 +1.9
731,044 + OKGIIK_03225 0.87 -0.4
731,044 + OKGIIK_03225 0.87 -1.4
731,044 + OKGIIK_03225 0.87 -1.9
731,044 + OKGIIK_03225 0.87 +0.6
731,044 + OKGIIK_03225 0.87 +0.4
731,044 + OKGIIK_03225 0.87 +0.7
731,045 - OKGIIK_03225 0.87 -2.2
731,045 - OKGIIK_03225 0.87 -0.3
731,045 - OKGIIK_03225 0.87 -1.7
731,045 - OKGIIK_03225 0.87 -0.1
731,045 - OKGIIK_03225 0.87 +0.6
731,045 - OKGIIK_03225 0.87 -0.8
731,045 - OKGIIK_03225 0.87 -1.3
731,045 - OKGIIK_03225 0.87 +0.1
731,045 - OKGIIK_03225 0.87 -1.1
731,071 - +1.6
731,375 + OKGIIK_03230 0.60 -0.5
731,375 + OKGIIK_03230 0.60 +1.3
731,375 + OKGIIK_03230 0.60 +0.2
731,375 + OKGIIK_03230 0.60 -2.4
731,375 + OKGIIK_03230 0.60 +0.0
731,376 - OKGIIK_03230 0.61 +1.5
731,376 - OKGIIK_03230 0.61 -0.1
731,453 + +0.3
731,453 + -0.4
731,453 + +0.1
731,453 + -1.5
731,453 + -1.3
731,453 + -0.8
731,453 + -1.8
731,453 + -0.3
731,453 + +0.1
731,453 + -0.5
731,454 - -0.4
731,454 - +0.5
731,454 - -1.1
731,454 - -1.1
731,454 - -0.5
731,454 - -0.5
731,454 - -1.3
731,454 - -0.3
731,454 - -0.6
731,454 - -0.3
731,454 - -0.6
731,454 - +1.3
731,454 - -0.3
731,454 - +0.2
731,454 - +0.4
731,466 + -1.1
731,467 - -0.3
731,467 - -0.5
731,467 - -0.6
731,467 - +0.5
731,483 - -0.7
731,483 - -0.5
731,483 - -1.7
731,483 - +0.7

Or see this region's nucleotide sequence