Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03140

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapE and OKGIIK_03140 are separated by 29 nucleotidesOKGIIK_03140 and OKGIIK_03145 are separated by 15 nucleotidesOKGIIK_03145 and nosY are separated by 10 nucleotides OKGIIK_03135: dapE - succinyl-diaminopimelate desuccinylase, at 709,491 to 710,693 dapE OKGIIK_03140: OKGIIK_03140 - Sec-independent protein translocase protein TatA, at 710,723 to 710,926 _03140 OKGIIK_03145: OKGIIK_03145 - Nitrous oxide reductase, at 710,942 to 711,601 _03145 OKGIIK_03150: nosY - ABC transporter permease, at 711,612 to 712,445 nosY Position (kb) 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.789 kb on - strand, within OKGIIK_03140at 710.789 kb on - strand, within OKGIIK_03140at 711.087 kb on + strand, within OKGIIK_03145at 711.087 kb on + strand, within OKGIIK_03145at 711.087 kb on + strand, within OKGIIK_03145at 711.087 kb on + strand, within OKGIIK_03145at 711.087 kb on + strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.237 kb on + strand, within OKGIIK_03145at 711.237 kb on + strand, within OKGIIK_03145at 711.237 kb on + strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.703 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.811 kb on + strand, within nosYat 711.812 kb on - strand, within nosYat 711.812 kb on - strand, within nosYat 711.812 kb on - strand, within nosYat 711.812 kb on - strand, within nosYat 711.812 kb on - strand, within nosYat 711.812 kb on - strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.817 kb on + strand, within nosYat 711.818 kb on - strand, within nosYat 711.818 kb on - strand, within nosYat 711.818 kb on - strand, within nosYat 711.818 kb on - strand, within nosYat 711.818 kb on - strand, within nosY

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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710,788 + OKGIIK_03140 0.32 -2.7
710,788 + OKGIIK_03140 0.32 -1.4
710,788 + OKGIIK_03140 0.32 -0.6
710,788 + OKGIIK_03140 0.32 -1.5
710,788 + OKGIIK_03140 0.32 -2.3
710,789 - OKGIIK_03140 0.32 +0.4
710,789 - OKGIIK_03140 0.32 -0.4
711,087 + OKGIIK_03145 0.22 -2.0
711,087 + OKGIIK_03145 0.22 -0.7
711,087 + OKGIIK_03145 0.22 -1.2
711,087 + OKGIIK_03145 0.22 -1.4
711,087 + OKGIIK_03145 0.22 -1.0
711,088 - OKGIIK_03145 0.22 -1.8
711,088 - OKGIIK_03145 0.22 -1.5
711,088 - OKGIIK_03145 0.22 -1.5
711,088 - OKGIIK_03145 0.22 +0.4
711,088 - OKGIIK_03145 0.22 -1.4
711,088 - OKGIIK_03145 0.22 -0.2
711,088 - OKGIIK_03145 0.22 -0.5
711,088 - OKGIIK_03145 0.22 +0.2
711,237 + OKGIIK_03145 0.45 -1.2
711,237 + OKGIIK_03145 0.45 -1.7
711,237 + OKGIIK_03145 0.45 -1.0
711,238 - OKGIIK_03145 0.45 -0.5
711,238 - OKGIIK_03145 0.45 +0.9
711,238 - OKGIIK_03145 0.45 -1.8
711,238 - OKGIIK_03145 0.45 -0.2
711,238 - OKGIIK_03145 0.45 -1.4
711,318 + OKGIIK_03145 0.57 -1.6
711,318 + OKGIIK_03145 0.57 -0.2
711,318 + OKGIIK_03145 0.57 -2.2
711,318 + OKGIIK_03145 0.57 -0.9
711,318 + OKGIIK_03145 0.57 -1.5
711,318 + OKGIIK_03145 0.57 -0.4
711,318 + OKGIIK_03145 0.57 -1.0
711,318 + OKGIIK_03145 0.57 -0.5
711,318 + OKGIIK_03145 0.57 -0.4
711,318 + OKGIIK_03145 0.57 +1.2
711,318 + OKGIIK_03145 0.57 -1.2
711,318 + OKGIIK_03145 0.57 -2.4
711,318 + OKGIIK_03145 0.57 +0.6
711,318 + OKGIIK_03145 0.57 -1.2
711,318 + OKGIIK_03145 0.57 -1.4
711,318 + OKGIIK_03145 0.57 -1.4
711,318 + OKGIIK_03145 0.57 -0.4
711,318 + OKGIIK_03145 0.57 +0.3
711,319 - OKGIIK_03145 0.57 -0.4
711,319 - OKGIIK_03145 0.57 -1.2
711,319 - OKGIIK_03145 0.57 +0.6
711,319 - OKGIIK_03145 0.57 -1.1
711,319 - OKGIIK_03145 0.57 -0.7
711,319 - OKGIIK_03145 0.57 +0.1
711,319 - OKGIIK_03145 0.57 -2.4
711,319 - OKGIIK_03145 0.57 -0.7
711,319 - OKGIIK_03145 0.57 -0.7
711,319 - OKGIIK_03145 0.57 -0.4
711,319 - OKGIIK_03145 0.57 -2.3
711,319 - OKGIIK_03145 0.57 -0.2
711,319 - OKGIIK_03145 0.57 -0.4
711,319 - OKGIIK_03145 0.57 -0.3
711,319 - OKGIIK_03145 0.57 -1.0
711,319 - OKGIIK_03145 0.57 +0.4
711,319 - OKGIIK_03145 0.57 -1.5
711,319 - OKGIIK_03145 0.57 -1.0
711,319 - OKGIIK_03145 0.57 -2.5
711,319 - OKGIIK_03145 0.57 +0.0
711,319 - OKGIIK_03145 0.57 -0.7
711,319 - OKGIIK_03145 0.57 -2.0
711,319 - OKGIIK_03145 0.57 +0.3
711,319 - OKGIIK_03145 0.57 -1.0
711,319 - OKGIIK_03145 0.57 +1.6
711,360 + OKGIIK_03145 0.63 -1.4
711,360 + OKGIIK_03145 0.63 -2.8
711,360 + OKGIIK_03145 0.63 +1.6
711,360 + OKGIIK_03145 0.63 -1.7
711,360 + OKGIIK_03145 0.63 -0.1
711,360 + OKGIIK_03145 0.63 -2.7
711,360 + OKGIIK_03145 0.63 -1.8
711,360 + OKGIIK_03145 0.63 -0.8
711,360 + OKGIIK_03145 0.63 -1.4
711,361 - OKGIIK_03145 0.63 +0.2
711,361 - OKGIIK_03145 0.63 +2.1
711,361 - OKGIIK_03145 0.63 +4.3
711,361 - OKGIIK_03145 0.63 +1.6
711,361 - OKGIIK_03145 0.63 -1.0
711,361 - OKGIIK_03145 0.63 -0.7
711,361 - OKGIIK_03145 0.63 -0.7
711,361 - OKGIIK_03145 0.63 -2.7
711,361 - OKGIIK_03145 0.63 -1.0
711,361 - OKGIIK_03145 0.63 -2.0
711,361 - OKGIIK_03145 0.63 -0.7
711,361 - OKGIIK_03145 0.63 +0.1
711,361 - OKGIIK_03145 0.63 -1.0
711,361 - OKGIIK_03145 0.63 -0.7
711,361 - OKGIIK_03145 0.63 +0.0
711,453 + OKGIIK_03145 0.77 -2.2
711,453 + OKGIIK_03145 0.77 -1.8
711,453 + OKGIIK_03145 0.77 -1.7
711,453 + OKGIIK_03145 0.77 -1.1
711,453 + OKGIIK_03145 0.77 +0.2
711,453 + OKGIIK_03145 0.77 -1.4
711,453 + OKGIIK_03145 0.77 -0.7
711,453 + OKGIIK_03145 0.77 -0.2
711,453 + OKGIIK_03145 0.77 -1.3
711,453 + OKGIIK_03145 0.77 +0.3
711,453 + OKGIIK_03145 0.77 +1.3
711,453 + OKGIIK_03145 0.77 -0.8
711,453 + OKGIIK_03145 0.77 +0.6
711,453 + OKGIIK_03145 0.77 -0.8
711,453 + OKGIIK_03145 0.77 +0.3
711,453 + OKGIIK_03145 0.77 -0.7
711,453 + OKGIIK_03145 0.77 -1.5
711,453 + OKGIIK_03145 0.77 -1.8
711,453 + OKGIIK_03145 0.77 -1.0
711,453 + OKGIIK_03145 0.77 -1.4
711,453 + OKGIIK_03145 0.77 +0.6
711,453 + OKGIIK_03145 0.77 -1.4
711,453 + OKGIIK_03145 0.77 -1.4
711,453 + OKGIIK_03145 0.77 -0.4
711,453 + OKGIIK_03145 0.77 -1.0
711,453 + OKGIIK_03145 0.77 -1.8
711,453 + OKGIIK_03145 0.77 +0.6
711,453 + OKGIIK_03145 0.77 +0.6
711,454 - OKGIIK_03145 0.78 -1.4
711,454 - OKGIIK_03145 0.78 +0.3
711,454 - OKGIIK_03145 0.78 -0.6
711,454 - OKGIIK_03145 0.78 -0.1
711,454 - OKGIIK_03145 0.78 -0.9
711,454 - OKGIIK_03145 0.78 -0.7
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -2.1
711,454 - OKGIIK_03145 0.78 -2.0
711,454 - OKGIIK_03145 0.78 -1.0
711,454 - OKGIIK_03145 0.78 -0.7
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -0.7
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -1.4
711,454 - OKGIIK_03145 0.78 -1.8
711,454 - OKGIIK_03145 0.78 +0.2
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -2.3
711,454 - OKGIIK_03145 0.78 -1.5
711,454 - OKGIIK_03145 0.78 -2.3
711,454 - OKGIIK_03145 0.78 -2.5
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -1.4
711,454 - OKGIIK_03145 0.78 -0.4
711,703 + nosY OKGIIK_03150 0.11 -2.3
711,811 + nosY OKGIIK_03150 0.24 +0.0
711,811 + nosY OKGIIK_03150 0.24 +0.6
711,811 + nosY OKGIIK_03150 0.24 -1.4
711,811 + nosY OKGIIK_03150 0.24 -0.4
711,811 + nosY OKGIIK_03150 0.24 +0.3
711,811 + nosY OKGIIK_03150 0.24 -2.1
711,811 + nosY OKGIIK_03150 0.24 -1.2
711,812 - nosY OKGIIK_03150 0.24 -0.4
711,812 - nosY OKGIIK_03150 0.24 -1.8
711,812 - nosY OKGIIK_03150 0.24 -1.3
711,812 - nosY OKGIIK_03150 0.24 -0.4
711,812 - nosY OKGIIK_03150 0.24 -0.9
711,812 - nosY OKGIIK_03150 0.24 -1.0
711,817 + nosY OKGIIK_03150 0.25 -0.2
711,817 + nosY OKGIIK_03150 0.25 -0.2
711,817 + nosY OKGIIK_03150 0.25 -1.2
711,817 + nosY OKGIIK_03150 0.25 -1.8
711,817 + nosY OKGIIK_03150 0.25 -1.0
711,817 + nosY OKGIIK_03150 0.25 +0.6
711,817 + nosY OKGIIK_03150 0.25 -0.7
711,817 + nosY OKGIIK_03150 0.25 +1.2
711,817 + nosY OKGIIK_03150 0.25 -1.7
711,818 - nosY OKGIIK_03150 0.25 -1.0
711,818 - nosY OKGIIK_03150 0.25 -0.8
711,818 - nosY OKGIIK_03150 0.25 -1.5
711,818 - nosY OKGIIK_03150 0.25 -1.1
711,818 - nosY OKGIIK_03150 0.25 -0.4

Or see this region's nucleotide sequence