Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03040

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03035 and OKGIIK_03040 are separated by 115 nucleotidesOKGIIK_03040 and purE are separated by 133 nucleotidespurE and purK overlap by 4 nucleotides OKGIIK_03035: OKGIIK_03035 - hypothetical protein, at 688,631 to 691,780 _03035 OKGIIK_03040: OKGIIK_03040 - hypothetical protein, at 691,896 to 692,165 _03040 OKGIIK_03045: purE - Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase, at 692,299 to 692,736 purE OKGIIK_03050: purK - 5-(carboxyamino)imidazole ribonucleotide synthase, at 692,733 to 693,923 purK Position (kb) 691 692 693Strain fitness (log2 ratio) -2 -1 0 1at 691.140 kb on + strand, within OKGIIK_03035at 691.140 kb on + strand, within OKGIIK_03035at 691.140 kb on + strand, within OKGIIK_03035at 691.140 kb on + strand, within OKGIIK_03035at 691.141 kb on - strand, within OKGIIK_03035at 691.141 kb on - strand, within OKGIIK_03035at 691.141 kb on - strand, within OKGIIK_03035at 691.141 kb on - strand, within OKGIIK_03035at 691.167 kb on + strand, within OKGIIK_03035at 691.167 kb on + strand, within OKGIIK_03035at 691.167 kb on + strand, within OKGIIK_03035at 691.168 kb on - strand, within OKGIIK_03035at 691.168 kb on - strand, within OKGIIK_03035at 691.168 kb on - strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.185 kb on + strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.186 kb on - strand, within OKGIIK_03035at 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.572 kb on + strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.573 kb on - strandat 691.837 kb on + strandat 691.837 kb on + strandat 691.838 kb on - strandat 691.838 kb on - strandat 691.846 kb on + strandat 691.847 kb on - strandat 691.847 kb on - strandat 691.860 kb on + strandat 691.897 kb on + strandat 691.897 kb on + strandat 691.898 kb on - strandat 691.898 kb on - strandat 691.978 kb on + strand, within OKGIIK_03040at 691.978 kb on + strand, within OKGIIK_03040at 691.978 kb on + strand, within OKGIIK_03040at 691.978 kb on + strand, within OKGIIK_03040at 691.978 kb on + strand, within OKGIIK_03040at 691.979 kb on - strand, within OKGIIK_03040at 691.979 kb on - strand, within OKGIIK_03040at 691.979 kb on - strand, within OKGIIK_03040at 691.979 kb on - strand, within OKGIIK_03040at 692.204 kb on + strandat 692.204 kb on + strandat 692.205 kb on - strandat 692.205 kb on - strandat 692.755 kb on + strandat 692.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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691,140 + OKGIIK_03035 0.80 -0.7
691,140 + OKGIIK_03035 0.80 -0.7
691,140 + OKGIIK_03035 0.80 +0.0
691,140 + OKGIIK_03035 0.80 -0.4
691,141 - OKGIIK_03035 0.80 +0.3
691,141 - OKGIIK_03035 0.80 -0.2
691,141 - OKGIIK_03035 0.80 +0.0
691,141 - OKGIIK_03035 0.80 -1.2
691,167 + OKGIIK_03035 0.81 -2.3
691,167 + OKGIIK_03035 0.81 -0.5
691,167 + OKGIIK_03035 0.81 +0.3
691,168 - OKGIIK_03035 0.81 +0.6
691,168 - OKGIIK_03035 0.81 +1.1
691,168 - OKGIIK_03035 0.81 -0.9
691,185 + OKGIIK_03035 0.81 +0.1
691,185 + OKGIIK_03035 0.81 -1.5
691,185 + OKGIIK_03035 0.81 -0.1
691,185 + OKGIIK_03035 0.81 -1.6
691,185 + OKGIIK_03035 0.81 -1.0
691,185 + OKGIIK_03035 0.81 -0.7
691,185 + OKGIIK_03035 0.81 -2.4
691,185 + OKGIIK_03035 0.81 +0.0
691,185 + OKGIIK_03035 0.81 -0.6
691,185 + OKGIIK_03035 0.81 +0.2
691,186 - OKGIIK_03035 0.81 -0.7
691,186 - OKGIIK_03035 0.81 -1.4
691,186 - OKGIIK_03035 0.81 +1.3
691,186 - OKGIIK_03035 0.81 -0.7
691,186 - OKGIIK_03035 0.81 +1.0
691,186 - OKGIIK_03035 0.81 -0.5
691,186 - OKGIIK_03035 0.81 +0.1
691,186 - OKGIIK_03035 0.81 -0.5
691,186 - OKGIIK_03035 0.81 -1.5
691,186 - OKGIIK_03035 0.81 -0.6
691,572 + -0.2
691,572 + -0.2
691,572 + +1.0
691,572 + -0.6
691,572 + +0.8
691,572 + +0.3
691,572 + -0.2
691,572 + +0.3
691,573 - -0.8
691,573 - +1.3
691,573 - -0.2
691,573 - -0.5
691,573 - -1.2
691,573 - -1.8
691,573 - -0.2
691,573 - +1.3
691,573 - -0.7
691,573 - +0.3
691,573 - -1.4
691,573 - +1.0
691,573 - +0.0
691,573 - -0.2
691,573 - -1.4
691,573 - -2.0
691,573 - -0.2
691,837 + -1.1
691,837 + -1.1
691,838 - +1.6
691,838 - -0.8
691,846 + +0.3
691,847 - +0.3
691,847 - +0.3
691,860 + -1.5
691,897 + -0.5
691,897 + -0.3
691,898 - -1.6
691,898 - -0.2
691,978 + OKGIIK_03040 0.30 +1.5
691,978 + OKGIIK_03040 0.30 +1.0
691,978 + OKGIIK_03040 0.30 +0.3
691,978 + OKGIIK_03040 0.30 +0.3
691,978 + OKGIIK_03040 0.30 +0.3
691,979 - OKGIIK_03040 0.31 +1.2
691,979 - OKGIIK_03040 0.31 +0.4
691,979 - OKGIIK_03040 0.31 +0.3
691,979 - OKGIIK_03040 0.31 +0.9
692,204 + +0.9
692,204 + +0.3
692,205 - +0.9
692,205 - -0.7
692,755 + -0.4
692,755 + +0.6

Or see this region's nucleotide sequence