Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02980

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02970 and OKGIIK_02975 overlap by 4 nucleotidesOKGIIK_02975 and OKGIIK_02980 overlap by 4 nucleotidesOKGIIK_02980 and OKGIIK_02985 overlap by 4 nucleotides OKGIIK_02970: OKGIIK_02970 - TetR family transcriptional regulator, at 676,425 to 677,105 _02970 OKGIIK_02975: OKGIIK_02975 - Hemolysin secretion protein D, at 677,102 to 678,073 _02975 OKGIIK_02980: OKGIIK_02980 - ABC transporter ATP-binding protein, at 678,070 to 679,029 _02980 OKGIIK_02985: OKGIIK_02985 - ABC transporter, at 679,026 to 680,135 _02985 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 677.471 kb on + strand, within OKGIIK_02975at 677.471 kb on + strand, within OKGIIK_02975at 677.472 kb on - strand, within OKGIIK_02975at 677.474 kb on + strand, within OKGIIK_02975at 677.474 kb on + strand, within OKGIIK_02975at 677.475 kb on - strand, within OKGIIK_02975at 677.475 kb on - strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.898 kb on - strand, within OKGIIK_02975at 677.898 kb on - strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.948 kb on + strand, within OKGIIK_02975at 677.949 kb on - strand, within OKGIIK_02975at 677.949 kb on - strand, within OKGIIK_02975at 677.984 kb on + strandat 677.984 kb on + strandat 677.984 kb on + strandat 677.985 kb on - strandat 677.985 kb on - strandat 677.985 kb on - strandat 677.985 kb on - strandat 678.181 kb on + strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.858 kb on + strand, within OKGIIK_02980at 678.859 kb on - strand, within OKGIIK_02980at 679.114 kb on + strandat 679.115 kb on - strandat 679.115 kb on - strandat 679.115 kb on - strandat 679.144 kb on - strand, within OKGIIK_02985at 679.271 kb on + strand, within OKGIIK_02985at 679.521 kb on + strand, within OKGIIK_02985at 679.521 kb on + strand, within OKGIIK_02985at 679.521 kb on + strand, within OKGIIK_02985at 679.521 kb on + strand, within OKGIIK_02985at 679.521 kb on + strand, within OKGIIK_02985at 679.522 kb on - strand, within OKGIIK_02985at 679.522 kb on - strand, within OKGIIK_02985at 679.704 kb on + strand, within OKGIIK_02985at 679.704 kb on + strand, within OKGIIK_02985at 679.704 kb on + strand, within OKGIIK_02985at 679.704 kb on + strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.705 kb on - strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.797 kb on + strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985at 679.798 kb on - strand, within OKGIIK_02985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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677,471 + OKGIIK_02975 0.38 +0.0
677,471 + OKGIIK_02975 0.38 -0.8
677,472 - OKGIIK_02975 0.38 +0.5
677,474 + OKGIIK_02975 0.38 -1.8
677,474 + OKGIIK_02975 0.38 -1.8
677,475 - OKGIIK_02975 0.38 +1.0
677,475 - OKGIIK_02975 0.38 +0.2
677,507 + OKGIIK_02975 0.42 -1.1
677,507 + OKGIIK_02975 0.42 +2.7
677,507 + OKGIIK_02975 0.42 +0.0
677,507 + OKGIIK_02975 0.42 +0.3
677,741 + OKGIIK_02975 0.66 -1.0
677,741 + OKGIIK_02975 0.66 +1.6
677,741 + OKGIIK_02975 0.66 +1.0
677,741 + OKGIIK_02975 0.66 -2.0
677,741 + OKGIIK_02975 0.66 -1.2
677,741 + OKGIIK_02975 0.66 -0.4
677,741 + OKGIIK_02975 0.66 -1.0
677,741 + OKGIIK_02975 0.66 -1.1
677,742 - OKGIIK_02975 0.66 +0.8
677,742 - OKGIIK_02975 0.66 -1.1
677,742 - OKGIIK_02975 0.66 +0.4
677,742 - OKGIIK_02975 0.66 -1.9
677,742 - OKGIIK_02975 0.66 -0.5
677,742 - OKGIIK_02975 0.66 -0.2
677,742 - OKGIIK_02975 0.66 -0.1
677,742 - OKGIIK_02975 0.66 -0.7
677,819 + OKGIIK_02975 0.74 -0.7
677,819 + OKGIIK_02975 0.74 -1.2
677,819 + OKGIIK_02975 0.74 +0.8
677,819 + OKGIIK_02975 0.74 +0.0
677,819 + OKGIIK_02975 0.74 +0.3
677,819 + OKGIIK_02975 0.74 -1.6
677,819 + OKGIIK_02975 0.74 +1.3
677,819 + OKGIIK_02975 0.74 +1.0
677,819 + OKGIIK_02975 0.74 -0.2
677,819 + OKGIIK_02975 0.74 +0.5
677,819 + OKGIIK_02975 0.74 -1.4
677,819 + OKGIIK_02975 0.74 +0.3
677,819 + OKGIIK_02975 0.74 -0.4
677,819 + OKGIIK_02975 0.74 +0.3
677,819 + OKGIIK_02975 0.74 -0.5
677,819 + OKGIIK_02975 0.74 +0.1
677,819 + OKGIIK_02975 0.74 -0.7
677,819 + OKGIIK_02975 0.74 +1.3
677,820 - OKGIIK_02975 0.74 +0.0
677,820 - OKGIIK_02975 0.74 +0.9
677,820 - OKGIIK_02975 0.74 +0.3
677,820 - OKGIIK_02975 0.74 -0.7
677,820 - OKGIIK_02975 0.74 +0.0
677,820 - OKGIIK_02975 0.74 +0.6
677,820 - OKGIIK_02975 0.74 +0.9
677,820 - OKGIIK_02975 0.74 -0.2
677,820 - OKGIIK_02975 0.74 +0.0
677,820 - OKGIIK_02975 0.74 -0.5
677,897 + OKGIIK_02975 0.82 -0.1
677,897 + OKGIIK_02975 0.82 +0.0
677,897 + OKGIIK_02975 0.82 -0.9
677,898 - OKGIIK_02975 0.82 -0.5
677,898 - OKGIIK_02975 0.82 +0.9
677,945 + OKGIIK_02975 0.87 +0.3
677,945 + OKGIIK_02975 0.87 -0.1
677,945 + OKGIIK_02975 0.87 -1.9
677,946 - OKGIIK_02975 0.87 -0.5
677,946 - OKGIIK_02975 0.87 +0.7
677,946 - OKGIIK_02975 0.87 +0.3
677,946 - OKGIIK_02975 0.87 +1.3
677,946 - OKGIIK_02975 0.87 +0.0
677,946 - OKGIIK_02975 0.87 -0.5
677,946 - OKGIIK_02975 0.87 -0.7
677,946 - OKGIIK_02975 0.87 +0.0
677,948 + OKGIIK_02975 0.87 +1.6
677,949 - OKGIIK_02975 0.87 -0.3
677,949 - OKGIIK_02975 0.87 -1.1
677,984 + +0.1
677,984 + -1.8
677,984 + +0.5
677,985 - -0.9
677,985 - +1.1
677,985 - +0.3
677,985 - +0.8
678,181 + OKGIIK_02980 0.12 +0.5
678,182 - OKGIIK_02980 0.12 +0.5
678,182 - OKGIIK_02980 0.12 +2.9
678,182 - OKGIIK_02980 0.12 +1.9
678,325 + OKGIIK_02980 0.27 +0.5
678,325 + OKGIIK_02980 0.27 -0.2
678,325 + OKGIIK_02980 0.27 +1.3
678,325 + OKGIIK_02980 0.27 +0.5
678,325 + OKGIIK_02980 0.27 +1.7
678,325 + OKGIIK_02980 0.27 +1.9
678,451 + OKGIIK_02980 0.40 -3.1
678,451 + OKGIIK_02980 0.40 -0.2
678,451 + OKGIIK_02980 0.40 -1.1
678,451 + OKGIIK_02980 0.40 +1.1
678,451 + OKGIIK_02980 0.40 +0.3
678,451 + OKGIIK_02980 0.40 -1.1
678,451 + OKGIIK_02980 0.40 +0.2
678,451 + OKGIIK_02980 0.40 +1.9
678,452 - OKGIIK_02980 0.40 +0.8
678,452 - OKGIIK_02980 0.40 +0.0
678,452 - OKGIIK_02980 0.40 -0.0
678,452 - OKGIIK_02980 0.40 -2.4
678,452 - OKGIIK_02980 0.40 +1.2
678,452 - OKGIIK_02980 0.40 +0.0
678,452 - OKGIIK_02980 0.40 +0.3
678,452 - OKGIIK_02980 0.40 +0.3
678,858 + OKGIIK_02980 0.82 +0.0
678,859 - OKGIIK_02980 0.82 +0.0
679,114 + -0.2
679,115 - -0.8
679,115 - -0.7
679,115 - +0.8
679,144 - OKGIIK_02985 0.11 +0.3
679,271 + OKGIIK_02985 0.22 -0.5
679,521 + OKGIIK_02985 0.45 +0.2
679,521 + OKGIIK_02985 0.45 -0.2
679,521 + OKGIIK_02985 0.45 -0.2
679,521 + OKGIIK_02985 0.45 +0.9
679,521 + OKGIIK_02985 0.45 -0.7
679,522 - OKGIIK_02985 0.45 +0.0
679,522 - OKGIIK_02985 0.45 +0.7
679,704 + OKGIIK_02985 0.61 +0.5
679,704 + OKGIIK_02985 0.61 +0.0
679,704 + OKGIIK_02985 0.61 -0.2
679,704 + OKGIIK_02985 0.61 -1.6
679,705 - OKGIIK_02985 0.61 +0.3
679,705 - OKGIIK_02985 0.61 +0.4
679,705 - OKGIIK_02985 0.61 -0.2
679,705 - OKGIIK_02985 0.61 -0.3
679,705 - OKGIIK_02985 0.61 -0.7
679,705 - OKGIIK_02985 0.61 +0.4
679,705 - OKGIIK_02985 0.61 -1.4
679,705 - OKGIIK_02985 0.61 -0.2
679,705 - OKGIIK_02985 0.61 -1.6
679,705 - OKGIIK_02985 0.61 +1.0
679,705 - OKGIIK_02985 0.61 +0.0
679,705 - OKGIIK_02985 0.61 -1.2
679,705 - OKGIIK_02985 0.61 +0.0
679,705 - OKGIIK_02985 0.61 -1.1
679,705 - OKGIIK_02985 0.61 +0.0
679,705 - OKGIIK_02985 0.61 +0.1
679,705 - OKGIIK_02985 0.61 +2.8
679,705 - OKGIIK_02985 0.61 -0.4
679,797 + OKGIIK_02985 0.69 +1.0
679,797 + OKGIIK_02985 0.69 +0.8
679,797 + OKGIIK_02985 0.69 -0.2
679,797 + OKGIIK_02985 0.69 +0.3
679,797 + OKGIIK_02985 0.69 +0.2
679,797 + OKGIIK_02985 0.69 -0.7
679,797 + OKGIIK_02985 0.69 -1.4
679,797 + OKGIIK_02985 0.69 -0.1
679,797 + OKGIIK_02985 0.69 -0.0
679,797 + OKGIIK_02985 0.69 -1.1
679,797 + OKGIIK_02985 0.69 -2.1
679,797 + OKGIIK_02985 0.69 +0.5
679,798 - OKGIIK_02985 0.70 -1.2
679,798 - OKGIIK_02985 0.70 -0.7
679,798 - OKGIIK_02985 0.70 +1.5
679,798 - OKGIIK_02985 0.70 +0.3
679,798 - OKGIIK_02985 0.70 +1.6
679,798 - OKGIIK_02985 0.70 -1.0
679,798 - OKGIIK_02985 0.70 -0.5
679,798 - OKGIIK_02985 0.70 +0.6
679,798 - OKGIIK_02985 0.70 -0.4
679,798 - OKGIIK_02985 0.70 +0.0
679,798 - OKGIIK_02985 0.70 -0.2

Or see this region's nucleotide sequence