Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02900

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02890 and OKGIIK_02895 are separated by 118 nucleotidesOKGIIK_02895 and OKGIIK_02900 are separated by 12 nucleotidesOKGIIK_02900 and OKGIIK_02905 are separated by 2 nucleotidesOKGIIK_02905 and cheD overlap by 1 nucleotides OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293 _02890 OKGIIK_02895: OKGIIK_02895 - Chemotaxis protein CheW, at 663,412 to 663,939 _02895 OKGIIK_02900: OKGIIK_02900 - Chemotaxis protein, at 663,952 to 665,673 _02900 OKGIIK_02905: OKGIIK_02905 - Chemotaxis protein methyltransferase, at 665,676 to 666,560 _02905 OKGIIK_02910: cheD - chemoreceptor glutamine deamidase CheD, at 666,560 to 667,210 cheD Position (kb) 663 664 665 666Strain fitness (log2 ratio) -2 -1 0 1 2 3at 663.012 kb on + strand, within OKGIIK_02890at 663.012 kb on + strand, within OKGIIK_02890at 663.012 kb on + strand, within OKGIIK_02890at 663.012 kb on + strand, within OKGIIK_02890at 663.013 kb on - strand, within OKGIIK_02890at 663.013 kb on - strand, within OKGIIK_02890at 663.013 kb on - strand, within OKGIIK_02890at 663.013 kb on - strand, within OKGIIK_02890at 663.180 kb on + strandat 663.180 kb on + strandat 663.180 kb on + strandat 663.180 kb on + strandat 663.180 kb on + strandat 663.181 kb on - strandat 663.181 kb on - strandat 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.472 kb on + strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.473 kb on - strand, within OKGIIK_02895at 663.502 kb on + strand, within OKGIIK_02895at 663.503 kb on - strand, within OKGIIK_02895at 663.524 kb on + strand, within OKGIIK_02895at 663.577 kb on + strand, within OKGIIK_02895at 663.577 kb on + strand, within OKGIIK_02895at 663.577 kb on + strand, within OKGIIK_02895at 663.577 kb on + strand, within OKGIIK_02895at 663.577 kb on + strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.578 kb on - strand, within OKGIIK_02895at 663.661 kb on + strand, within OKGIIK_02895at 663.661 kb on + strand, within OKGIIK_02895at 663.661 kb on + strand, within OKGIIK_02895at 663.662 kb on - strand, within OKGIIK_02895at 663.662 kb on - strand, within OKGIIK_02895at 663.662 kb on - strand, within OKGIIK_02895at 663.805 kb on + strand, within OKGIIK_02895at 663.806 kb on - strand, within OKGIIK_02895at 663.923 kb on + strandat 663.923 kb on + strandat 663.923 kb on + strandat 663.923 kb on + strandat 663.923 kb on + strandat 663.923 kb on + strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.924 kb on - strandat 663.929 kb on - strandat 664.016 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.105 kb on + strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.106 kb on - strandat 664.246 kb on + strand, within OKGIIK_02900at 664.246 kb on + strand, within OKGIIK_02900at 664.246 kb on + strand, within OKGIIK_02900at 664.246 kb on + strand, within OKGIIK_02900at 664.246 kb on + strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.247 kb on - strand, within OKGIIK_02900at 664.327 kb on + strand, within OKGIIK_02900at 664.327 kb on + strand, within OKGIIK_02900at 664.327 kb on + strand, within OKGIIK_02900at 664.327 kb on + strand, within OKGIIK_02900at 664.328 kb on - strand, within OKGIIK_02900at 664.328 kb on - strand, within OKGIIK_02900at 664.328 kb on - strand, within OKGIIK_02900at 664.328 kb on - strand, within OKGIIK_02900at 664.328 kb on - strand, within OKGIIK_02900at 664.348 kb on + strand, within OKGIIK_02900at 664.348 kb on + strand, within OKGIIK_02900at 664.349 kb on - strand, within OKGIIK_02900at 664.680 kb on + strand, within OKGIIK_02900at 664.680 kb on + strand, within OKGIIK_02900at 664.681 kb on - strand, within OKGIIK_02900at 664.681 kb on - strand, within OKGIIK_02900at 664.681 kb on - strand, within OKGIIK_02900at 665.203 kb on - strand, within OKGIIK_02900at 665.474 kb on - strand, within OKGIIK_02900at 665.880 kb on + strand, within OKGIIK_02905at 665.880 kb on + strand, within OKGIIK_02905at 665.881 kb on - strand, within OKGIIK_02905at 665.979 kb on + strand, within OKGIIK_02905at 665.979 kb on + strand, within OKGIIK_02905at 665.979 kb on + strand, within OKGIIK_02905at 666.088 kb on - strand, within OKGIIK_02905at 666.088 kb on - strand, within OKGIIK_02905at 666.088 kb on - strand, within OKGIIK_02905at 666.207 kb on + strand, within OKGIIK_02905at 666.279 kb on + strand, within OKGIIK_02905at 666.280 kb on - strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.405 kb on + strand, within OKGIIK_02905at 666.406 kb on - strand, within OKGIIK_02905at 666.406 kb on - strand, within OKGIIK_02905at 666.406 kb on - strand, within OKGIIK_02905at 666.406 kb on - strand, within OKGIIK_02905at 666.406 kb on - strand, within OKGIIK_02905at 666.567 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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663,012 + OKGIIK_02890 0.86 +0.8
663,012 + OKGIIK_02890 0.86 -1.9
663,012 + OKGIIK_02890 0.86 -1.9
663,012 + OKGIIK_02890 0.86 -0.1
663,013 - OKGIIK_02890 0.86 +1.5
663,013 - OKGIIK_02890 0.86 -1.6
663,013 - OKGIIK_02890 0.86 +1.6
663,013 - OKGIIK_02890 0.86 +0.5
663,180 + -0.7
663,180 + +0.0
663,180 + -0.4
663,180 + +0.6
663,180 + +1.3
663,181 - +0.3
663,181 - -0.2
663,472 + OKGIIK_02895 0.11 +0.6
663,472 + OKGIIK_02895 0.11 +0.0
663,472 + OKGIIK_02895 0.11 -0.1
663,472 + OKGIIK_02895 0.11 -0.8
663,472 + OKGIIK_02895 0.11 +0.5
663,472 + OKGIIK_02895 0.11 +0.3
663,472 + OKGIIK_02895 0.11 -1.6
663,472 + OKGIIK_02895 0.11 -0.3
663,472 + OKGIIK_02895 0.11 -0.7
663,472 + OKGIIK_02895 0.11 -0.7
663,473 - OKGIIK_02895 0.12 +1.3
663,473 - OKGIIK_02895 0.12 +2.0
663,473 - OKGIIK_02895 0.12 -1.0
663,473 - OKGIIK_02895 0.12 -1.8
663,473 - OKGIIK_02895 0.12 -0.3
663,473 - OKGIIK_02895 0.12 +1.3
663,473 - OKGIIK_02895 0.12 +0.4
663,473 - OKGIIK_02895 0.12 +1.1
663,473 - OKGIIK_02895 0.12 -0.5
663,473 - OKGIIK_02895 0.12 -0.3
663,473 - OKGIIK_02895 0.12 +0.5
663,502 + OKGIIK_02895 0.17 -1.6
663,503 - OKGIIK_02895 0.17 -0.1
663,524 + OKGIIK_02895 0.21 +0.2
663,577 + OKGIIK_02895 0.31 +0.2
663,577 + OKGIIK_02895 0.31 +0.2
663,577 + OKGIIK_02895 0.31 +0.0
663,577 + OKGIIK_02895 0.31 +0.2
663,577 + OKGIIK_02895 0.31 +0.2
663,578 - OKGIIK_02895 0.31 -0.8
663,578 - OKGIIK_02895 0.31 -1.6
663,578 - OKGIIK_02895 0.31 -0.1
663,578 - OKGIIK_02895 0.31 -0.8
663,578 - OKGIIK_02895 0.31 -0.8
663,578 - OKGIIK_02895 0.31 +1.0
663,578 - OKGIIK_02895 0.31 -0.3
663,578 - OKGIIK_02895 0.31 -0.4
663,578 - OKGIIK_02895 0.31 +1.5
663,578 - OKGIIK_02895 0.31 +0.0
663,578 - OKGIIK_02895 0.31 -0.3
663,661 + OKGIIK_02895 0.47 -0.8
663,661 + OKGIIK_02895 0.47 -1.7
663,661 + OKGIIK_02895 0.47 -0.3
663,662 - OKGIIK_02895 0.47 +0.2
663,662 - OKGIIK_02895 0.47 +1.0
663,662 - OKGIIK_02895 0.47 -0.8
663,805 + OKGIIK_02895 0.74 +1.8
663,806 - OKGIIK_02895 0.75 -2.1
663,923 + +0.3
663,923 + +0.0
663,923 + -1.7
663,923 + +2.1
663,923 + -2.6
663,923 + +0.9
663,924 - -1.0
663,924 - -2.1
663,924 - +0.7
663,924 - +1.0
663,924 - -0.8
663,924 - -0.6
663,924 - -1.7
663,924 - -0.3
663,924 - +1.9
663,924 - +0.1
663,929 - +0.2
664,016 + -0.5
664,105 + -0.7
664,105 + +3.0
664,105 + +1.3
664,105 + +0.1
664,105 + +0.1
664,105 + +0.4
664,105 + -0.0
664,105 + +0.2
664,105 + -0.5
664,105 + -0.7
664,105 + -2.1
664,105 + -0.3
664,105 + -1.3
664,105 + -0.3
664,105 + -0.3
664,105 + +0.0
664,106 - -0.6
664,106 - +0.5
664,106 - +1.3
664,106 - +0.4
664,106 - +0.3
664,106 - +0.0
664,106 - +0.3
664,106 - -1.4
664,106 - -0.0
664,106 - +1.0
664,106 - +1.6
664,106 - -0.7
664,106 - +0.8
664,246 + OKGIIK_02900 0.17 +2.5
664,246 + OKGIIK_02900 0.17 +0.0
664,246 + OKGIIK_02900 0.17 -0.4
664,246 + OKGIIK_02900 0.17 +0.0
664,246 + OKGIIK_02900 0.17 +0.5
664,247 - OKGIIK_02900 0.17 +1.0
664,247 - OKGIIK_02900 0.17 -1.2
664,247 - OKGIIK_02900 0.17 +2.3
664,247 - OKGIIK_02900 0.17 +1.2
664,247 - OKGIIK_02900 0.17 -0.0
664,247 - OKGIIK_02900 0.17 -0.1
664,247 - OKGIIK_02900 0.17 -0.6
664,247 - OKGIIK_02900 0.17 -2.5
664,327 + OKGIIK_02900 0.22 -0.1
664,327 + OKGIIK_02900 0.22 +0.2
664,327 + OKGIIK_02900 0.22 +0.4
664,327 + OKGIIK_02900 0.22 -1.4
664,328 - OKGIIK_02900 0.22 -0.5
664,328 - OKGIIK_02900 0.22 -0.0
664,328 - OKGIIK_02900 0.22 -1.3
664,328 - OKGIIK_02900 0.22 +0.3
664,328 - OKGIIK_02900 0.22 +1.0
664,348 + OKGIIK_02900 0.23 +1.5
664,348 + OKGIIK_02900 0.23 -0.6
664,349 - OKGIIK_02900 0.23 +1.7
664,680 + OKGIIK_02900 0.42 -0.3
664,680 + OKGIIK_02900 0.42 -0.8
664,681 - OKGIIK_02900 0.42 -0.3
664,681 - OKGIIK_02900 0.42 +0.0
664,681 - OKGIIK_02900 0.42 +1.0
665,203 - OKGIIK_02900 0.73 +0.3
665,474 - OKGIIK_02900 0.88 +0.0
665,880 + OKGIIK_02905 0.23 +0.7
665,880 + OKGIIK_02905 0.23 -0.3
665,881 - OKGIIK_02905 0.23 -0.3
665,979 + OKGIIK_02905 0.34 -2.4
665,979 + OKGIIK_02905 0.34 +0.8
665,979 + OKGIIK_02905 0.34 +0.5
666,088 - OKGIIK_02905 0.47 -0.5
666,088 - OKGIIK_02905 0.47 -0.8
666,088 - OKGIIK_02905 0.47 +0.7
666,207 + OKGIIK_02905 0.60 -0.2
666,279 + OKGIIK_02905 0.68 +0.7
666,280 - OKGIIK_02905 0.68 -0.3
666,405 + OKGIIK_02905 0.82 -0.2
666,405 + OKGIIK_02905 0.82 -0.2
666,405 + OKGIIK_02905 0.82 -1.7
666,405 + OKGIIK_02905 0.82 +1.0
666,405 + OKGIIK_02905 0.82 +1.2
666,405 + OKGIIK_02905 0.82 -0.4
666,405 + OKGIIK_02905 0.82 -1.1
666,405 + OKGIIK_02905 0.82 -0.3
666,405 + OKGIIK_02905 0.82 +1.2
666,406 - OKGIIK_02905 0.82 +0.2
666,406 - OKGIIK_02905 0.82 +0.3
666,406 - OKGIIK_02905 0.82 +0.0
666,406 - OKGIIK_02905 0.82 +0.5
666,406 - OKGIIK_02905 0.82 -2.3
666,567 + -1.0

Or see this region's nucleotide sequence