Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02875 and OKGIIK_02880 are separated by 160 nucleotides OKGIIK_02880 and ompR are separated by 13 nucleotides ompR and OKGIIK_02890 are separated by 17 nucleotides OKGIIK_02890 and OKGIIK_02895 are separated by 118 nucleotides OKGIIK_02895 and OKGIIK_02900 are separated by 12 nucleotides
OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406
_02875
OKGIIK_02880: OKGIIK_02880 - STAS domain-containing protein, at 660,567 to 660,926
_02880
OKGIIK_02885: ompR - response regulator, at 660,940 to 661,302
ompR
OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293
_02890
OKGIIK_02895: OKGIIK_02895 - Chemotaxis protein CheW, at 663,412 to 663,939
_02895
OKGIIK_02900: OKGIIK_02900 - Chemotaxis protein, at 663,952 to 665,673
_02900
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.525 kb on + strand at 660.525 kb on + strand at 661.109 kb on + strand, within ompR at 661.110 kb on - strand, within ompR at 661.110 kb on - strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.181 kb on - strand at 663.181 kb on - strand at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.502 kb on + strand, within OKGIIK_02895 at 663.503 kb on - strand, within OKGIIK_02895 at 663.524 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.805 kb on + strand, within OKGIIK_02895 at 663.806 kb on - strand, within OKGIIK_02895 at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.929 kb on - strand at 664.016 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 660,525 + +1.6 660,525 + +1.1 661,109 + ompR OKGIIK_02885 0.47 +0.7 661,110 - ompR OKGIIK_02885 0.47 -1.1 661,110 - ompR OKGIIK_02885 0.47 -0.8 661,156 + ompR OKGIIK_02885 0.60 +1.3 661,156 + ompR OKGIIK_02885 0.60 -0.3 661,156 + ompR OKGIIK_02885 0.60 -1.3 661,156 + ompR OKGIIK_02885 0.60 -0.3 661,156 + ompR OKGIIK_02885 0.60 -0.3 661,156 + ompR OKGIIK_02885 0.60 +1.0 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +0.6 661,156 + ompR OKGIIK_02885 0.60 +1.7 661,156 + ompR OKGIIK_02885 0.60 +0.7 661,156 + ompR OKGIIK_02885 0.60 +0.0 661,156 + ompR OKGIIK_02885 0.60 +0.0 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +0.0 661,156 + ompR OKGIIK_02885 0.60 -0.8 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +0.7 661,156 + ompR OKGIIK_02885 0.60 +1.3 661,156 + ompR OKGIIK_02885 0.60 +1.3 661,156 + ompR OKGIIK_02885 0.60 +2.0 661,156 + ompR OKGIIK_02885 0.60 -0.5 661,157 - ompR OKGIIK_02885 0.60 +0.6 661,157 - ompR OKGIIK_02885 0.60 +1.0 661,157 - ompR OKGIIK_02885 0.60 -1.8 661,157 - ompR OKGIIK_02885 0.60 +1.3 661,157 - ompR OKGIIK_02885 0.60 +2.1 661,157 - ompR OKGIIK_02885 0.60 +0.7 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 -1.1 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -0.4 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +0.0 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 +1.0 661,157 - ompR OKGIIK_02885 0.60 +0.0 661,157 - ompR OKGIIK_02885 0.60 -0.6 661,157 - ompR OKGIIK_02885 0.60 +1.9 661,157 - ompR OKGIIK_02885 0.60 +0.0 661,157 - ompR OKGIIK_02885 0.60 +1.0 662,910 + OKGIIK_02890 0.81 +0.0 662,910 + OKGIIK_02890 0.81 +0.3 662,910 + OKGIIK_02890 0.81 +0.0 662,910 + OKGIIK_02890 0.81 +0.6 662,910 + OKGIIK_02890 0.81 +0.3 662,910 + OKGIIK_02890 0.81 -1.8 662,910 + OKGIIK_02890 0.81 +0.0 662,911 - OKGIIK_02890 0.81 +0.3 662,911 - OKGIIK_02890 0.81 -1.8 662,911 - OKGIIK_02890 0.81 -1.0 662,911 - OKGIIK_02890 0.81 +1.6 662,911 - OKGIIK_02890 0.81 +0.0 662,911 - OKGIIK_02890 0.81 +0.0 662,911 - OKGIIK_02890 0.81 -1.9 662,911 - OKGIIK_02890 0.81 +0.3 662,911 - OKGIIK_02890 0.81 -0.1 662,911 - OKGIIK_02890 0.81 -0.4 662,911 - OKGIIK_02890 0.81 -1.0 662,911 - OKGIIK_02890 0.81 +1.0 662,911 - OKGIIK_02890 0.81 -0.5 662,911 - OKGIIK_02890 0.81 +0.3 662,911 - OKGIIK_02890 0.81 +0.0 662,911 - OKGIIK_02890 0.81 +0.0 663,012 + OKGIIK_02890 0.86 +0.8 663,012 + OKGIIK_02890 0.86 -1.9 663,012 + OKGIIK_02890 0.86 -1.9 663,012 + OKGIIK_02890 0.86 -0.1 663,013 - OKGIIK_02890 0.86 +1.5 663,013 - OKGIIK_02890 0.86 -1.6 663,013 - OKGIIK_02890 0.86 +1.6 663,013 - OKGIIK_02890 0.86 +0.5 663,180 + -0.7 663,180 + +0.0 663,180 + -0.4 663,180 + +0.6 663,180 + +1.3 663,181 - +0.3 663,181 - -0.2 663,472 + OKGIIK_02895 0.11 +0.6 663,472 + OKGIIK_02895 0.11 +0.0 663,472 + OKGIIK_02895 0.11 -0.1 663,472 + OKGIIK_02895 0.11 -0.8 663,472 + OKGIIK_02895 0.11 +0.5 663,472 + OKGIIK_02895 0.11 +0.3 663,472 + OKGIIK_02895 0.11 -1.6 663,472 + OKGIIK_02895 0.11 -0.3 663,472 + OKGIIK_02895 0.11 -0.7 663,472 + OKGIIK_02895 0.11 -0.7 663,473 - OKGIIK_02895 0.12 +1.3 663,473 - OKGIIK_02895 0.12 +2.0 663,473 - OKGIIK_02895 0.12 -1.0 663,473 - OKGIIK_02895 0.12 -1.8 663,473 - OKGIIK_02895 0.12 -0.3 663,473 - OKGIIK_02895 0.12 +1.3 663,473 - OKGIIK_02895 0.12 +0.4 663,473 - OKGIIK_02895 0.12 +1.1 663,473 - OKGIIK_02895 0.12 -0.5 663,473 - OKGIIK_02895 0.12 -0.3 663,473 - OKGIIK_02895 0.12 +0.5 663,502 + OKGIIK_02895 0.17 -1.6 663,503 - OKGIIK_02895 0.17 -0.1 663,524 + OKGIIK_02895 0.21 +0.2 663,577 + OKGIIK_02895 0.31 +0.2 663,577 + OKGIIK_02895 0.31 +0.2 663,577 + OKGIIK_02895 0.31 +0.0 663,577 + OKGIIK_02895 0.31 +0.2 663,577 + OKGIIK_02895 0.31 +0.2 663,578 - OKGIIK_02895 0.31 -0.8 663,578 - OKGIIK_02895 0.31 -1.6 663,578 - OKGIIK_02895 0.31 -0.1 663,578 - OKGIIK_02895 0.31 -0.8 663,578 - OKGIIK_02895 0.31 -0.8 663,578 - OKGIIK_02895 0.31 +1.0 663,578 - OKGIIK_02895 0.31 -0.3 663,578 - OKGIIK_02895 0.31 -0.4 663,578 - OKGIIK_02895 0.31 +1.5 663,578 - OKGIIK_02895 0.31 +0.0 663,578 - OKGIIK_02895 0.31 -0.3 663,661 + OKGIIK_02895 0.47 -0.8 663,661 + OKGIIK_02895 0.47 -1.7 663,661 + OKGIIK_02895 0.47 -0.3 663,662 - OKGIIK_02895 0.47 +0.2 663,662 - OKGIIK_02895 0.47 +1.0 663,662 - OKGIIK_02895 0.47 -0.8 663,805 + OKGIIK_02895 0.74 +1.8 663,806 - OKGIIK_02895 0.75 -2.1 663,923 + +0.3 663,923 + +0.0 663,923 + -1.7 663,923 + +2.1 663,923 + -2.6 663,923 + +0.9 663,924 - -1.0 663,924 - -2.1 663,924 - +0.7 663,924 - +1.0 663,924 - -0.8 663,924 - -0.6 663,924 - -1.7 663,924 - -0.3 663,924 - +1.9 663,924 - +0.1 663,929 - +0.2 664,016 + -0.5 664,105 + -0.7 664,105 + +3.0 664,105 + +1.3 664,105 + +0.1 664,105 + +0.1 664,105 + +0.4 664,105 + -0.0 664,105 + +0.2 664,105 + -0.5 664,105 + -0.7 664,105 + -2.1 664,105 + -0.3 664,105 + -1.3 664,105 + -0.3 664,105 + -0.3 664,105 + +0.0 664,106 - -0.6 664,106 - +0.5 664,106 - +1.3 664,106 - +0.4 664,106 - +0.3 664,106 - +0.0 664,106 - +0.3 664,106 - -1.4 664,106 - -0.0 664,106 - +1.0 664,106 - +1.6 664,106 - -0.7 664,106 - +0.8 664,246 + OKGIIK_02900 0.17 +2.5 664,246 + OKGIIK_02900 0.17 +0.0 664,246 + OKGIIK_02900 0.17 -0.4 664,246 + OKGIIK_02900 0.17 +0.0 664,246 + OKGIIK_02900 0.17 +0.5 664,247 - OKGIIK_02900 0.17 +1.0 664,247 - OKGIIK_02900 0.17 -1.2 664,247 - OKGIIK_02900 0.17 +2.3 664,247 - OKGIIK_02900 0.17 +1.2 664,247 - OKGIIK_02900 0.17 -0.0 664,247 - OKGIIK_02900 0.17 -0.1 664,247 - OKGIIK_02900 0.17 -0.6 664,247 - OKGIIK_02900 0.17 -2.5
Or see this region's nucleotide sequence