Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliM and fliN overlap by 4 nucleotides fliN and fliO are separated by 137 nucleotides fliO and fliP overlap by 4 nucleotides
OKGIIK_02780: fliM - flagellar motor switch protein FliM, at 642,253 to 643,269
fliM
OKGIIK_02785: fliN - flagellar motor switch protein FliN, at 643,266 to 643,613
fliN
OKGIIK_02790: fliO - flagellar biosynthetic protein FliO, at 643,751 to 644,119
fliO
OKGIIK_02795: fliP - flagellar type III secretion system pore protein FliP, at 644,116 to 644,862
fliP
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 642.787 kb on + strand, within fliM at 642.787 kb on + strand, within fliM at 642.788 kb on - strand, within fliM at 642.788 kb on - strand, within fliM at 642.910 kb on + strand, within fliM at 642.911 kb on - strand, within fliM at 643.165 kb on + strand, within fliM at 643.277 kb on + strand at 643.277 kb on + strand at 643.277 kb on + strand at 643.278 kb on - strand at 643.739 kb on + strand at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.475 kb on - strand, within fliP at 644.600 kb on - strand, within fliP at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.890 kb on + strand at 644.890 kb on + strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 642,787 + fliM OKGIIK_02780 0.53 +1.0 642,787 + fliM OKGIIK_02780 0.53 +0.3 642,788 - fliM OKGIIK_02780 0.53 -0.0 642,788 - fliM OKGIIK_02780 0.53 -0.0 642,910 + fliM OKGIIK_02780 0.65 -2.1 642,911 - fliM OKGIIK_02780 0.65 +0.5 643,165 + fliM OKGIIK_02780 0.90 -0.2 643,277 + -0.7 643,277 + +0.1 643,277 + -1.7 643,278 - +1.8 643,739 + +0.5 644,027 + fliO OKGIIK_02790 0.75 +6.5 644,027 + fliO OKGIIK_02790 0.75 -0.5 644,027 + fliO OKGIIK_02790 0.75 -1.7 644,470 + fliP OKGIIK_02795 0.47 -1.1 644,470 + fliP OKGIIK_02795 0.47 +0.1 644,470 + fliP OKGIIK_02795 0.47 -0.1 644,470 + fliP OKGIIK_02795 0.47 +1.2 644,470 + fliP OKGIIK_02795 0.47 +0.3 644,470 + fliP OKGIIK_02795 0.47 -0.7 644,470 + fliP OKGIIK_02795 0.47 +0.7 644,470 + fliP OKGIIK_02795 0.47 -1.0 644,471 - fliP OKGIIK_02795 0.48 +0.5 644,471 - fliP OKGIIK_02795 0.48 -0.7 644,471 - fliP OKGIIK_02795 0.48 +1.4 644,471 - fliP OKGIIK_02795 0.48 -0.7 644,471 - fliP OKGIIK_02795 0.48 +0.4 644,475 - fliP OKGIIK_02795 0.48 -1.5 644,600 - fliP OKGIIK_02795 0.65 +0.3 644,854 + -1.1 644,854 + -0.7 644,854 + -0.2 644,854 + +1.8 644,854 + -1.7 644,855 - -0.0 644,855 - +0.6 644,855 - -0.6 644,855 - +0.3 644,855 - +0.5 644,855 - -0.3 644,855 - +0.8 644,855 - -0.5 644,890 + +0.7 644,890 + -0.3 644,891 - -0.3 644,891 - -0.9 644,891 - +0.7 644,891 - -0.9 644,891 - +0.2 644,891 - +0.3 644,891 - -0.3
Or see this region's nucleotide sequence