Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliI and fliJ overlap by 4 nucleotides fliJ and OKGIIK_02770 are separated by 64 nucleotides OKGIIK_02770 and OKGIIK_02775 are separated by 282 nucleotides OKGIIK_02775 and fliM are separated by 14 nucleotides
OKGIIK_02760: fliI - flagellar protein export ATPase FliI, at 638,504 to 639,883
fliI
OKGIIK_02765: fliJ - flagellar export protein FliJ, at 639,880 to 640,305
fliJ
OKGIIK_02770: OKGIIK_02770 - Flg-hook domain-containing protein, at 640,370 to 641,452
_02770
OKGIIK_02775: OKGIIK_02775 - Flagellar protein FliL, at 641,735 to 642,238
_02775
OKGIIK_02780: fliM - flagellar motor switch protein FliM, at 642,253 to 643,269
fliM
Position (kb) 640
641
642 Strain fitness (log2 ratio) -1
0
1
2 at 639.393 kb on - strand, within fliI at 639.480 kb on - strand, within fliI at 639.480 kb on - strand, within fliI at 639.556 kb on + strand, within fliI at 639.689 kb on + strand, within fliI at 639.689 kb on + strand, within fliI at 639.690 kb on - strand, within fliI at 639.690 kb on - strand, within fliI at 639.690 kb on - strand, within fliI at 639.690 kb on - strand, within fliI at 639.690 kb on - strand, within fliI at 639.734 kb on + strand, within fliI at 640.027 kb on + strand, within fliJ at 640.027 kb on + strand, within fliJ at 640.027 kb on + strand, within fliJ at 640.028 kb on - strand, within fliJ at 640.028 kb on - strand, within fliJ at 640.028 kb on - strand, within fliJ at 640.028 kb on - strand, within fliJ at 640.518 kb on + strand, within OKGIIK_02770 at 640.518 kb on + strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 640.519 kb on - strand, within OKGIIK_02770 at 641.852 kb on + strand, within OKGIIK_02775 at 641.853 kb on - strand, within OKGIIK_02775 at 641.853 kb on - strand, within OKGIIK_02775 at 641.930 kb on + strand, within OKGIIK_02775 at 641.930 kb on + strand, within OKGIIK_02775 at 641.930 kb on + strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.931 kb on - strand, within OKGIIK_02775 at 641.987 kb on + strand, within OKGIIK_02775 at 641.987 kb on + strand, within OKGIIK_02775 at 641.988 kb on - strand, within OKGIIK_02775 at 641.988 kb on - strand, within OKGIIK_02775 at 642.102 kb on - strand, within OKGIIK_02775 at 642.102 kb on - strand, within OKGIIK_02775 at 642.102 kb on - strand, within OKGIIK_02775 at 642.212 kb on + strand at 642.212 kb on + strand at 642.212 kb on + strand at 642.212 kb on + strand at 642.212 kb on + strand at 642.212 kb on + strand at 642.213 kb on - strand at 642.213 kb on - strand at 642.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 639,393 - fliI OKGIIK_02760 0.64 -0.0 639,480 - fliI OKGIIK_02760 0.71 +0.5 639,480 - fliI OKGIIK_02760 0.71 +0.3 639,556 + fliI OKGIIK_02760 0.76 -0.3 639,689 + fliI OKGIIK_02760 0.86 +1.8 639,689 + fliI OKGIIK_02760 0.86 -1.4 639,690 - fliI OKGIIK_02760 0.86 -1.2 639,690 - fliI OKGIIK_02760 0.86 -0.7 639,690 - fliI OKGIIK_02760 0.86 -0.9 639,690 - fliI OKGIIK_02760 0.86 +1.1 639,690 - fliI OKGIIK_02760 0.86 -0.8 639,734 + fliI OKGIIK_02760 0.89 +0.9 640,027 + fliJ OKGIIK_02765 0.35 -1.6 640,027 + fliJ OKGIIK_02765 0.35 -1.3 640,027 + fliJ OKGIIK_02765 0.35 +0.8 640,028 - fliJ OKGIIK_02765 0.35 +1.1 640,028 - fliJ OKGIIK_02765 0.35 -0.3 640,028 - fliJ OKGIIK_02765 0.35 -0.2 640,028 - fliJ OKGIIK_02765 0.35 -1.5 640,518 + OKGIIK_02770 0.14 +0.2 640,518 + OKGIIK_02770 0.14 +0.5 640,519 - OKGIIK_02770 0.14 +0.5 640,519 - OKGIIK_02770 0.14 -0.1 640,519 - OKGIIK_02770 0.14 +0.3 640,519 - OKGIIK_02770 0.14 +0.6 640,519 - OKGIIK_02770 0.14 +1.5 640,519 - OKGIIK_02770 0.14 +0.1 640,519 - OKGIIK_02770 0.14 +0.2 640,519 - OKGIIK_02770 0.14 +0.1 640,519 - OKGIIK_02770 0.14 +0.6 640,519 - OKGIIK_02770 0.14 -0.0 640,519 - OKGIIK_02770 0.14 -0.0 641,852 + OKGIIK_02775 0.23 -1.1 641,853 - OKGIIK_02775 0.23 -1.3 641,853 - OKGIIK_02775 0.23 -1.5 641,930 + OKGIIK_02775 0.39 +2.6 641,930 + OKGIIK_02775 0.39 -0.9 641,930 + OKGIIK_02775 0.39 -0.3 641,931 - OKGIIK_02775 0.39 -0.4 641,931 - OKGIIK_02775 0.39 +0.4 641,931 - OKGIIK_02775 0.39 +0.3 641,931 - OKGIIK_02775 0.39 +1.5 641,931 - OKGIIK_02775 0.39 +0.1 641,931 - OKGIIK_02775 0.39 -0.9 641,931 - OKGIIK_02775 0.39 -0.0 641,987 + OKGIIK_02775 0.50 +0.7 641,987 + OKGIIK_02775 0.50 +1.9 641,988 - OKGIIK_02775 0.50 -0.7 641,988 - OKGIIK_02775 0.50 -0.5 642,102 - OKGIIK_02775 0.73 +1.3 642,102 - OKGIIK_02775 0.73 +0.5 642,102 - OKGIIK_02775 0.73 -1.4 642,212 + -0.0 642,212 + +0.3 642,212 + +0.2 642,212 + +0.9 642,212 + -0.5 642,212 + +1.2 642,213 - -1.4 642,213 - -0.5 642,213 - +0.2
Or see this region's nucleotide sequence