Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02640 and OKGIIK_02645 are separated by 195 nucleotides OKGIIK_02645 and flgB are separated by 169 nucleotides flgB and flgC overlap by 1 nucleotides
OKGIIK_02640: OKGIIK_02640 - Chemotaxis protein, at 614,696 to 616,000
_02640
OKGIIK_02645: OKGIIK_02645 - Chemotaxis protein, at 616,196 to 617,134
_02645
OKGIIK_02650: flgB - flagellar basal body rod protein FlgB, at 617,304 to 617,705
flgB
OKGIIK_02655: flgC - flagellar basal body rod protein FlgC, at 617,705 to 618,124
flgC
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2 at 615.707 kb on - strand, within OKGIIK_02640 at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.910 kb on - strand at 616.159 kb on - strand at 616.159 kb on - strand at 616.176 kb on + strand at 616.177 kb on - strand at 616.231 kb on + strand at 616.231 kb on + strand at 616.231 kb on + strand at 616.232 kb on - strand at 616.391 kb on + strand, within OKGIIK_02645 at 616.391 kb on + strand, within OKGIIK_02645 at 616.392 kb on - strand, within OKGIIK_02645 at 616.439 kb on + strand, within OKGIIK_02645 at 616.440 kb on - strand, within OKGIIK_02645 at 616.932 kb on - strand, within OKGIIK_02645 at 616.932 kb on - strand, within OKGIIK_02645 at 617.405 kb on + strand, within flgB at 617.416 kb on - strand, within flgB at 617.416 kb on - strand, within flgB at 617.416 kb on - strand, within flgB at 617.416 kb on - strand, within flgB at 617.416 kb on - strand, within flgB at 617.544 kb on + strand, within flgB at 617.580 kb on - strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.631 kb on + strand, within flgB at 617.632 kb on - strand, within flgB at 617.721 kb on + strand at 617.722 kb on - strand at 617.722 kb on - strand at 617.829 kb on - strand, within flgC at 617.940 kb on + strand, within flgC at 617.987 kb on + strand, within flgC at 617.987 kb on + strand, within flgC at 617.988 kb on - strand, within flgC at 617.988 kb on - strand, within flgC at 617.988 kb on - strand, within flgC at 617.988 kb on - strand, within flgC at 617.988 kb on - strand, within flgC at 617.988 kb on - strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.993 kb on + strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 617.994 kb on - strand, within flgC at 618.053 kb on + strand, within flgC at 618.054 kb on - strand, within flgC at 618.054 kb on - strand, within flgC
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 615,707 - OKGIIK_02640 0.77 -0.7 615,909 + -0.8 615,909 + +2.3 615,909 + +0.3 615,909 + -0.9 615,909 + +0.5 615,909 + -0.5 615,910 - -0.4 616,159 - +1.9 616,159 - -0.2 616,176 + -0.0 616,177 - -0.1 616,231 + -0.4 616,231 + +0.1 616,231 + -0.0 616,232 - -0.6 616,391 + OKGIIK_02645 0.21 +0.8 616,391 + OKGIIK_02645 0.21 -1.8 616,392 - OKGIIK_02645 0.21 +0.7 616,439 + OKGIIK_02645 0.26 +0.8 616,440 - OKGIIK_02645 0.26 +1.4 616,932 - OKGIIK_02645 0.78 +2.3 616,932 - OKGIIK_02645 0.78 -1.6 617,405 + flgB OKGIIK_02650 0.25 -1.7 617,416 - flgB OKGIIK_02650 0.28 -1.8 617,416 - flgB OKGIIK_02650 0.28 +0.7 617,416 - flgB OKGIIK_02650 0.28 +0.7 617,416 - flgB OKGIIK_02650 0.28 -1.2 617,416 - flgB OKGIIK_02650 0.28 -2.1 617,544 + flgB OKGIIK_02650 0.60 +1.3 617,580 - flgB OKGIIK_02650 0.69 -0.0 617,631 + flgB OKGIIK_02650 0.81 -0.5 617,631 + flgB OKGIIK_02650 0.81 -0.0 617,631 + flgB OKGIIK_02650 0.81 +0.0 617,631 + flgB OKGIIK_02650 0.81 -0.3 617,631 + flgB OKGIIK_02650 0.81 +1.3 617,631 + flgB OKGIIK_02650 0.81 -0.1 617,631 + flgB OKGIIK_02650 0.81 -0.3 617,631 + flgB OKGIIK_02650 0.81 -0.4 617,632 - flgB OKGIIK_02650 0.82 -1.2 617,721 + -2.1 617,722 - -0.0 617,722 - -0.3 617,829 - flgC OKGIIK_02655 0.30 -0.5 617,940 + flgC OKGIIK_02655 0.56 +1.0 617,987 + flgC OKGIIK_02655 0.67 -2.2 617,987 + flgC OKGIIK_02655 0.67 +0.7 617,988 - flgC OKGIIK_02655 0.67 -2.6 617,988 - flgC OKGIIK_02655 0.67 +1.6 617,988 - flgC OKGIIK_02655 0.67 +0.7 617,988 - flgC OKGIIK_02655 0.67 +1.6 617,988 - flgC OKGIIK_02655 0.67 +0.2 617,988 - flgC OKGIIK_02655 0.67 -0.0 617,993 + flgC OKGIIK_02655 0.69 -0.6 617,993 + flgC OKGIIK_02655 0.69 -1.3 617,993 + flgC OKGIIK_02655 0.69 -1.4 617,993 + flgC OKGIIK_02655 0.69 -0.7 617,993 + flgC OKGIIK_02655 0.69 -0.4 617,993 + flgC OKGIIK_02655 0.69 -1.3 617,993 + flgC OKGIIK_02655 0.69 +0.9 617,994 - flgC OKGIIK_02655 0.69 -0.6 617,994 - flgC OKGIIK_02655 0.69 -0.4 617,994 - flgC OKGIIK_02655 0.69 -0.0 617,994 - flgC OKGIIK_02655 0.69 +1.9 617,994 - flgC OKGIIK_02655 0.69 -0.2 617,994 - flgC OKGIIK_02655 0.69 +1.3 617,994 - flgC OKGIIK_02655 0.69 -2.7 618,053 + flgC OKGIIK_02655 0.83 -0.1 618,054 - flgC OKGIIK_02655 0.83 +0.3 618,054 - flgC OKGIIK_02655 0.83 -1.4
Or see this region's nucleotide sequence