Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgM and flgA are separated by 109 nucleotides flgA and OKGIIK_02640 overlap by 4 nucleotides OKGIIK_02640 and OKGIIK_02645 are separated by 195 nucleotides
OKGIIK_02630: flgM - flagellar biosynthesis anti-sigma factor FlgM, at 613,559 to 613,882
flgM
OKGIIK_02635: flgA - flagellar basal body P-ring formation protein FlgA, at 613,992 to 614,699
flgA
OKGIIK_02640: OKGIIK_02640 - Chemotaxis protein, at 614,696 to 616,000
_02640
OKGIIK_02645: OKGIIK_02645 - Chemotaxis protein, at 616,196 to 617,134
_02645
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.912 kb on + strand at 613.912 kb on + strand at 613.913 kb on - strand at 613.913 kb on - strand at 613.913 kb on - strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.963 kb on - strand at 613.963 kb on - strand at 613.963 kb on - strand at 613.963 kb on - strand at 613.963 kb on - strand at 614.269 kb on + strand, within flgA at 614.269 kb on + strand, within flgA at 614.270 kb on - strand, within flgA at 614.437 kb on - strand, within flgA at 614.566 kb on + strand, within flgA at 614.566 kb on + strand, within flgA at 614.566 kb on + strand, within flgA at 614.566 kb on + strand, within flgA at 614.566 kb on + strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.567 kb on - strand, within flgA at 614.577 kb on + strand, within flgA at 614.577 kb on + strand, within flgA at 614.577 kb on + strand, within flgA at 615.184 kb on + strand, within OKGIIK_02640 at 615.184 kb on + strand, within OKGIIK_02640 at 615.184 kb on + strand, within OKGIIK_02640 at 615.184 kb on + strand, within OKGIIK_02640 at 615.184 kb on + strand, within OKGIIK_02640 at 615.185 kb on - strand, within OKGIIK_02640 at 615.706 kb on + strand, within OKGIIK_02640 at 615.707 kb on - strand, within OKGIIK_02640 at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.909 kb on + strand at 615.910 kb on - strand at 615.910 kb on - strand at 615.910 kb on - strand at 615.910 kb on - strand at 616.021 kb on + strand at 616.021 kb on + strand at 616.021 kb on + strand at 616.021 kb on + strand at 616.022 kb on - strand at 616.022 kb on - strand at 616.147 kb on + strand at 616.159 kb on - strand at 616.176 kb on + strand at 616.176 kb on + strand at 616.177 kb on - strand at 616.231 kb on + strand at 616.231 kb on + strand at 616.231 kb on + strand at 616.231 kb on + strand at 616.232 kb on - strand at 616.232 kb on - strand at 616.232 kb on - strand at 616.232 kb on - strand at 616.232 kb on - strand at 616.391 kb on + strand, within OKGIIK_02645 at 616.391 kb on + strand, within OKGIIK_02645 at 616.391 kb on + strand, within OKGIIK_02645 at 616.392 kb on - strand, within OKGIIK_02645 at 616.392 kb on - strand, within OKGIIK_02645 at 616.439 kb on + strand, within OKGIIK_02645 at 616.439 kb on + strand, within OKGIIK_02645 at 616.440 kb on - strand, within OKGIIK_02645 at 616.931 kb on + strand, within OKGIIK_02645 at 616.932 kb on - strand, within OKGIIK_02645 at 616.932 kb on - strand, within OKGIIK_02645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 613,912 + -0.8 613,912 + -0.0 613,913 - -0.8 613,913 - -1.4 613,913 - -2.1 613,945 + -1.7 613,945 + -0.3 613,945 + -1.8 613,945 + -0.9 613,945 + -0.3 613,945 + +0.6 613,945 + +0.1 613,945 + +1.2 613,946 - -0.9 613,946 - -1.8 613,946 - -0.4 613,946 - +0.2 613,946 - -0.9 613,946 - -0.6 613,946 - -0.4 613,960 + -0.4 613,960 + +0.1 613,960 + -2.0 613,960 + -1.2 613,960 + -2.0 613,960 + +0.4 613,960 + -0.4 613,960 + +0.3 613,960 + -0.4 613,960 + -1.0 613,960 + -1.6 613,960 + -0.2 613,960 + -1.6 613,960 + -0.4 613,960 + -0.3 613,960 + -1.0 613,960 + -1.6 613,960 + -0.7 613,960 + -1.0 613,960 + -0.8 613,960 + -1.9 613,960 + -1.6 613,960 + -0.8 613,961 - +0.6 613,961 - -0.8 613,961 - -2.6 613,961 - -1.4 613,961 - -0.9 613,961 - -2.1 613,961 - -2.0 613,961 - -1.0 613,961 - -1.4 613,961 - -0.9 613,961 - -2.1 613,961 - -0.7 613,961 - -0.0 613,961 - -1.2 613,961 - -2.4 613,961 - -2.0 613,961 - -0.4 613,961 - +0.6 613,961 - -1.2 613,961 - +0.5 613,961 - -0.5 613,961 - -1.2 613,961 - -0.2 613,961 - -1.6 613,961 - -1.0 613,961 - -0.8 613,961 - +0.2 613,962 + -0.2 613,962 + +0.0 613,962 + -0.4 613,963 - +0.8 613,963 - -0.7 613,963 - -1.8 613,963 - -1.4 613,963 - -0.9 614,269 + flgA OKGIIK_02635 0.39 -0.8 614,269 + flgA OKGIIK_02635 0.39 -0.4 614,270 - flgA OKGIIK_02635 0.39 -0.4 614,437 - flgA OKGIIK_02635 0.63 -1.8 614,566 + flgA OKGIIK_02635 0.81 +0.2 614,566 + flgA OKGIIK_02635 0.81 +0.2 614,566 + flgA OKGIIK_02635 0.81 -1.8 614,566 + flgA OKGIIK_02635 0.81 +0.8 614,566 + flgA OKGIIK_02635 0.81 -0.2 614,567 - flgA OKGIIK_02635 0.81 -0.8 614,567 - flgA OKGIIK_02635 0.81 -0.8 614,567 - flgA OKGIIK_02635 0.81 -0.0 614,567 - flgA OKGIIK_02635 0.81 -1.9 614,567 - flgA OKGIIK_02635 0.81 -1.9 614,567 - flgA OKGIIK_02635 0.81 -0.8 614,567 - flgA OKGIIK_02635 0.81 -3.2 614,577 + flgA OKGIIK_02635 0.83 -1.8 614,577 + flgA OKGIIK_02635 0.83 -0.4 614,577 + flgA OKGIIK_02635 0.83 +1.0 615,184 + OKGIIK_02640 0.37 -0.7 615,184 + OKGIIK_02640 0.37 -0.6 615,184 + OKGIIK_02640 0.37 -0.4 615,184 + OKGIIK_02640 0.37 -2.1 615,184 + OKGIIK_02640 0.37 -1.7 615,185 - OKGIIK_02640 0.37 -1.6 615,706 + OKGIIK_02640 0.77 -1.4 615,707 - OKGIIK_02640 0.77 -1.4 615,909 + -2.1 615,909 + -1.5 615,909 + +1.6 615,909 + -0.4 615,909 + -0.2 615,909 + -1.2 615,910 - -0.7 615,910 - -1.7 615,910 - -1.1 615,910 - -0.4 616,021 + -1.0 616,021 + -1.1 616,021 + -0.4 616,021 + -2.0 616,022 - -0.7 616,022 - -1.2 616,147 + +1.2 616,159 - -0.9 616,176 + -0.7 616,176 + -0.0 616,177 - -0.8 616,231 + -1.1 616,231 + -1.9 616,231 + -0.6 616,231 + -0.7 616,232 - -1.2 616,232 - -1.3 616,232 - -1.6 616,232 - -0.7 616,232 - -1.3 616,391 + OKGIIK_02645 0.21 -0.4 616,391 + OKGIIK_02645 0.21 +0.1 616,391 + OKGIIK_02645 0.21 -2.5 616,392 - OKGIIK_02645 0.21 -0.0 616,392 - OKGIIK_02645 0.21 -1.2 616,439 + OKGIIK_02645 0.26 -0.6 616,439 + OKGIIK_02645 0.26 +0.1 616,440 - OKGIIK_02645 0.26 +0.7 616,931 + OKGIIK_02645 0.78 -1.4 616,932 - OKGIIK_02645 0.78 +1.6 616,932 - OKGIIK_02645 0.78 -2.3
Or see this region's nucleotide sequence