Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pitA and OKGIIK_02365 are separated by 167 nucleotides OKGIIK_02365 and atl1 are separated by 68 nucleotides atl1 and recQ are separated by 65 nucleotides
OKGIIK_02360: pitA - inorganic phosphate transporter, at 547,777 to 548,889
pitA
OKGIIK_02365: OKGIIK_02365 - hypothetical protein, at 549,057 to 549,461
_02365
OKGIIK_02370: atl1 - cysteine methyltransferase, at 549,530 to 549,871
atl1
OKGIIK_02375: recQ - DNA helicase RecQ, at 549,937 to 551,772
recQ
Position (kb) 549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.854 kb on + strand at 548.919 kb on - strand at 548.919 kb on - strand at 548.919 kb on - strand at 548.950 kb on - strand at 549.017 kb on + strand at 549.017 kb on + strand at 549.058 kb on + strand at 549.058 kb on + strand at 549.123 kb on + strand, within OKGIIK_02365 at 549.123 kb on + strand, within OKGIIK_02365 at 549.187 kb on + strand, within OKGIIK_02365 at 549.187 kb on + strand, within OKGIIK_02365 at 549.188 kb on - strand, within OKGIIK_02365 at 549.307 kb on + strand, within OKGIIK_02365 at 549.307 kb on + strand, within OKGIIK_02365 at 549.308 kb on - strand, within OKGIIK_02365 at 549.308 kb on - strand, within OKGIIK_02365 at 549.308 kb on - strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.343 kb on + strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.344 kb on - strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.394 kb on + strand, within OKGIIK_02365 at 549.395 kb on - strand, within OKGIIK_02365 at 549.432 kb on - strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.493 kb on + strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.494 kb on - strand at 549.554 kb on + strand at 549.554 kb on + strand at 549.554 kb on + strand at 549.554 kb on + strand at 549.554 kb on + strand at 549.555 kb on - strand at 549.555 kb on - strand at 549.555 kb on - strand at 549.555 kb on - strand at 549.555 kb on - strand at 549.596 kb on + strand, within atl1 at 549.597 kb on - strand, within atl1 at 549.692 kb on + strand, within atl1 at 549.804 kb on + strand, within atl1 at 549.933 kb on + strand at 549.934 kb on - strand at 549.938 kb on - strand at 550.087 kb on + strand at 550.087 kb on + strand at 550.087 kb on + strand at 550.087 kb on + strand at 550.087 kb on + strand at 550.088 kb on - strand at 550.088 kb on - strand at 550.088 kb on - strand at 550.088 kb on - strand at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.276 kb on + strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.277 kb on - strand, within recQ at 550.370 kb on + strand, within recQ at 550.371 kb on - strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.642 kb on + strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.643 kb on - strand, within recQ at 550.714 kb on + strand, within recQ
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 548,854 + -0.5 548,919 - -1.1 548,919 - +0.3 548,919 - +0.5 548,950 - +0.0 549,017 + +1.5 549,017 + -0.1 549,058 + -0.2 549,058 + -1.7 549,123 + OKGIIK_02365 0.16 -1.2 549,123 + OKGIIK_02365 0.16 -0.1 549,187 + OKGIIK_02365 0.32 -2.1 549,187 + OKGIIK_02365 0.32 +0.3 549,188 - OKGIIK_02365 0.32 -0.1 549,307 + OKGIIK_02365 0.62 -0.3 549,307 + OKGIIK_02365 0.62 +1.6 549,308 - OKGIIK_02365 0.62 -0.1 549,308 - OKGIIK_02365 0.62 +0.3 549,308 - OKGIIK_02365 0.62 -0.3 549,343 + OKGIIK_02365 0.71 -0.3 549,343 + OKGIIK_02365 0.71 -1.2 549,343 + OKGIIK_02365 0.71 -2.3 549,343 + OKGIIK_02365 0.71 -0.5 549,343 + OKGIIK_02365 0.71 -0.9 549,343 + OKGIIK_02365 0.71 -2.3 549,344 - OKGIIK_02365 0.71 +1.5 549,344 - OKGIIK_02365 0.71 +0.3 549,344 - OKGIIK_02365 0.71 +1.0 549,344 - OKGIIK_02365 0.71 +0.9 549,344 - OKGIIK_02365 0.71 -0.3 549,344 - OKGIIK_02365 0.71 -1.4 549,344 - OKGIIK_02365 0.71 +0.8 549,344 - OKGIIK_02365 0.71 +0.2 549,344 - OKGIIK_02365 0.71 -0.1 549,344 - OKGIIK_02365 0.71 -0.3 549,344 - OKGIIK_02365 0.71 -0.7 549,344 - OKGIIK_02365 0.71 -0.8 549,344 - OKGIIK_02365 0.71 +0.5 549,344 - OKGIIK_02365 0.71 +0.1 549,344 - OKGIIK_02365 0.71 +1.8 549,344 - OKGIIK_02365 0.71 -2.1 549,344 - OKGIIK_02365 0.71 -0.9 549,344 - OKGIIK_02365 0.71 -1.2 549,344 - OKGIIK_02365 0.71 -0.3 549,344 - OKGIIK_02365 0.71 +0.1 549,344 - OKGIIK_02365 0.71 +0.3 549,344 - OKGIIK_02365 0.71 +0.3 549,344 - OKGIIK_02365 0.71 -0.1 549,344 - OKGIIK_02365 0.71 -1.6 549,394 + OKGIIK_02365 0.83 -0.1 549,394 + OKGIIK_02365 0.83 -0.1 549,394 + OKGIIK_02365 0.83 -0.2 549,394 + OKGIIK_02365 0.83 +1.3 549,394 + OKGIIK_02365 0.83 -0.1 549,394 + OKGIIK_02365 0.83 -0.1 549,395 - OKGIIK_02365 0.83 -0.5 549,432 - +0.1 549,493 + -0.1 549,493 + -0.3 549,493 + +0.5 549,493 + -0.1 549,493 + -1.2 549,493 + -1.4 549,493 + -1.4 549,494 - -0.7 549,494 - -0.4 549,494 - +0.9 549,494 - -0.3 549,494 - +0.1 549,494 - -0.3 549,494 - -1.1 549,494 - -2.1 549,494 - +0.1 549,554 + -1.4 549,554 + +0.3 549,554 + -1.1 549,554 + -1.3 549,554 + +0.4 549,555 - +0.3 549,555 - -0.6 549,555 - -0.5 549,555 - -0.3 549,555 - -2.4 549,596 + atl1 OKGIIK_02370 0.19 +1.6 549,597 - atl1 OKGIIK_02370 0.20 -0.2 549,692 + atl1 OKGIIK_02370 0.47 -1.1 549,804 + atl1 OKGIIK_02370 0.80 +0.4 549,933 + -1.8 549,934 - -0.3 549,938 - -2.3 550,087 + +0.9 550,087 + -1.2 550,087 + -1.8 550,087 + +1.9 550,087 + +0.1 550,088 - -0.5 550,088 - +0.1 550,088 - +0.3 550,088 - +0.0 550,276 + recQ OKGIIK_02375 0.18 -0.9 550,276 + recQ OKGIIK_02375 0.18 -0.7 550,276 + recQ OKGIIK_02375 0.18 -1.1 550,276 + recQ OKGIIK_02375 0.18 -1.2 550,276 + recQ OKGIIK_02375 0.18 -0.8 550,276 + recQ OKGIIK_02375 0.18 -0.7 550,276 + recQ OKGIIK_02375 0.18 -1.6 550,276 + recQ OKGIIK_02375 0.18 -1.2 550,276 + recQ OKGIIK_02375 0.18 +0.7 550,276 + recQ OKGIIK_02375 0.18 -1.7 550,276 + recQ OKGIIK_02375 0.18 -0.1 550,276 + recQ OKGIIK_02375 0.18 +1.8 550,276 + recQ OKGIIK_02375 0.18 +0.4 550,276 + recQ OKGIIK_02375 0.18 -0.9 550,277 - recQ OKGIIK_02375 0.19 -1.0 550,277 - recQ OKGIIK_02375 0.19 -1.2 550,277 - recQ OKGIIK_02375 0.19 -0.5 550,277 - recQ OKGIIK_02375 0.19 -1.1 550,277 - recQ OKGIIK_02375 0.19 -0.5 550,277 - recQ OKGIIK_02375 0.19 +0.3 550,277 - recQ OKGIIK_02375 0.19 -0.4 550,277 - recQ OKGIIK_02375 0.19 +1.3 550,277 - recQ OKGIIK_02375 0.19 -0.5 550,277 - recQ OKGIIK_02375 0.19 +1.5 550,277 - recQ OKGIIK_02375 0.19 -0.1 550,277 - recQ OKGIIK_02375 0.19 +0.1 550,277 - recQ OKGIIK_02375 0.19 -1.4 550,277 - recQ OKGIIK_02375 0.19 +1.3 550,370 + recQ OKGIIK_02375 0.24 +0.3 550,371 - recQ OKGIIK_02375 0.24 -0.7 550,642 + recQ OKGIIK_02375 0.38 -0.7 550,642 + recQ OKGIIK_02375 0.38 -1.0 550,642 + recQ OKGIIK_02375 0.38 -0.1 550,642 + recQ OKGIIK_02375 0.38 -1.1 550,642 + recQ OKGIIK_02375 0.38 -2.3 550,642 + recQ OKGIIK_02375 0.38 +0.9 550,642 + recQ OKGIIK_02375 0.38 -0.3 550,642 + recQ OKGIIK_02375 0.38 -0.2 550,643 - recQ OKGIIK_02375 0.38 -0.9 550,643 - recQ OKGIIK_02375 0.38 -0.3 550,643 - recQ OKGIIK_02375 0.38 +0.9 550,643 - recQ OKGIIK_02375 0.38 -0.8 550,643 - recQ OKGIIK_02375 0.38 -1.4 550,643 - recQ OKGIIK_02375 0.38 -0.1 550,643 - recQ OKGIIK_02375 0.38 +1.7 550,714 + recQ OKGIIK_02375 0.42 +0.5
Or see this region's nucleotide sequence