Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02100

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02095 and OKGIIK_02100 overlap by 4 nucleotidesOKGIIK_02100 and OKGIIK_02105 are separated by 52 nucleotides OKGIIK_02095: OKGIIK_02095 - Aldehyde oxidase, at 485,950 to 488,202 _02095 OKGIIK_02100: OKGIIK_02100 - (2Fe-2S)-binding protein, at 488,199 to 488,735 _02100 OKGIIK_02105: OKGIIK_02105 - amino acid permease, at 488,788 to 490,113 _02105 Position (kb) 488 489Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 487.523 kb on + strand, within OKGIIK_02095at 487.523 kb on + strand, within OKGIIK_02095at 487.524 kb on - strand, within OKGIIK_02095at 487.524 kb on - strand, within OKGIIK_02095at 487.524 kb on - strand, within OKGIIK_02095at 487.524 kb on - strand, within OKGIIK_02095at 487.524 kb on - strand, within OKGIIK_02095at 487.541 kb on + strand, within OKGIIK_02095at 487.715 kb on + strand, within OKGIIK_02095at 487.715 kb on + strand, within OKGIIK_02095at 488.048 kb on + strandat 488.049 kb on - strandat 488.049 kb on - strandat 488.049 kb on - strandat 488.049 kb on - strandat 488.049 kb on - strandat 488.049 kb on - strandat 488.366 kb on - strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.557 kb on + strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.558 kb on - strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.593 kb on + strand, within OKGIIK_02100at 488.594 kb on - strand, within OKGIIK_02100at 488.594 kb on - strand, within OKGIIK_02100at 488.594 kb on - strand, within OKGIIK_02100at 488.633 kb on - strand, within OKGIIK_02100at 488.756 kb on + strandat 488.756 kb on + strandat 488.756 kb on + strandat 488.757 kb on - strandat 488.757 kb on - strandat 488.757 kb on - strandat 488.757 kb on - strandat 488.757 kb on - strandat 488.757 kb on - strandat 488.789 kb on + strandat 488.790 kb on - strandat 488.790 kb on - strandat 488.828 kb on + strandat 488.828 kb on + strandat 488.828 kb on + strandat 488.828 kb on + strandat 488.829 kb on - strandat 488.829 kb on - strandat 488.829 kb on - strandat 488.829 kb on - strandat 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.050 kb on + strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.051 kb on - strand, within OKGIIK_02105at 489.068 kb on + strand, within OKGIIK_02105at 489.068 kb on + strand, within OKGIIK_02105at 489.068 kb on + strand, within OKGIIK_02105at 489.068 kb on + strand, within OKGIIK_02105at 489.068 kb on + strand, within OKGIIK_02105at 489.069 kb on - strand, within OKGIIK_02105at 489.069 kb on - strand, within OKGIIK_02105at 489.069 kb on - strand, within OKGIIK_02105at 489.069 kb on - strand, within OKGIIK_02105at 489.292 kb on + strand, within OKGIIK_02105at 489.292 kb on + strand, within OKGIIK_02105at 489.292 kb on + strand, within OKGIIK_02105at 489.293 kb on - strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.362 kb on + strand, within OKGIIK_02105at 489.363 kb on - strand, within OKGIIK_02105at 489.363 kb on - strand, within OKGIIK_02105at 489.363 kb on - strand, within OKGIIK_02105at 489.383 kb on + strand, within OKGIIK_02105at 489.383 kb on + strand, within OKGIIK_02105at 489.383 kb on + strand, within OKGIIK_02105at 489.384 kb on - strand, within OKGIIK_02105at 489.384 kb on - strand, within OKGIIK_02105at 489.384 kb on - strand, within OKGIIK_02105at 489.384 kb on - strand, within OKGIIK_02105at 489.448 kb on + strand, within OKGIIK_02105at 489.448 kb on + strand, within OKGIIK_02105at 489.448 kb on + strand, within OKGIIK_02105at 489.448 kb on + strand, within OKGIIK_02105at 489.449 kb on - strand, within OKGIIK_02105at 489.449 kb on - strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.473 kb on + strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.474 kb on - strand, within OKGIIK_02105at 489.488 kb on + strand, within OKGIIK_02105at 489.488 kb on + strand, within OKGIIK_02105at 489.489 kb on - strand, within OKGIIK_02105

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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487,523 + OKGIIK_02095 0.70 +3.1
487,523 + OKGIIK_02095 0.70 +3.9
487,524 - OKGIIK_02095 0.70 +3.8
487,524 - OKGIIK_02095 0.70 +3.4
487,524 - OKGIIK_02095 0.70 +3.8
487,524 - OKGIIK_02095 0.70 +1.9
487,524 - OKGIIK_02095 0.70 +2.6
487,541 + OKGIIK_02095 0.71 +3.6
487,715 + OKGIIK_02095 0.78 +1.6
487,715 + OKGIIK_02095 0.78 +3.3
488,048 + +1.4
488,049 - +1.9
488,049 - +1.6
488,049 - +3.1
488,049 - +0.5
488,049 - +2.5
488,049 - +1.9
488,366 - OKGIIK_02100 0.31 +3.8
488,557 + OKGIIK_02100 0.67 +5.0
488,557 + OKGIIK_02100 0.67 +1.8
488,557 + OKGIIK_02100 0.67 +2.8
488,557 + OKGIIK_02100 0.67 +3.4
488,557 + OKGIIK_02100 0.67 +1.0
488,557 + OKGIIK_02100 0.67 +1.3
488,557 + OKGIIK_02100 0.67 +0.5
488,558 - OKGIIK_02100 0.67 +1.9
488,558 - OKGIIK_02100 0.67 +2.8
488,558 - OKGIIK_02100 0.67 +2.6
488,558 - OKGIIK_02100 0.67 +3.0
488,558 - OKGIIK_02100 0.67 +1.8
488,558 - OKGIIK_02100 0.67 +0.7
488,558 - OKGIIK_02100 0.67 -0.0
488,593 + OKGIIK_02100 0.73 +2.8
488,593 + OKGIIK_02100 0.73 +0.7
488,593 + OKGIIK_02100 0.73 +1.2
488,593 + OKGIIK_02100 0.73 +3.3
488,593 + OKGIIK_02100 0.73 +2.9
488,593 + OKGIIK_02100 0.73 +2.7
488,593 + OKGIIK_02100 0.73 +3.4
488,594 - OKGIIK_02100 0.74 +2.8
488,594 - OKGIIK_02100 0.74 +3.3
488,594 - OKGIIK_02100 0.74 +3.7
488,633 - OKGIIK_02100 0.81 +2.9
488,756 + +2.6
488,756 + +3.0
488,756 + +2.8
488,757 - +0.3
488,757 - +0.5
488,757 - -1.6
488,757 - -0.9
488,757 - +1.3
488,757 - +1.8
488,789 + +0.5
488,790 - -1.3
488,790 - +0.3
488,828 + +1.3
488,828 + -1.2
488,828 + +0.1
488,828 + +6.0
488,829 - +1.3
488,829 - +0.7
488,829 - -2.0
488,829 - +1.3
489,050 + OKGIIK_02105 0.20 +0.3
489,050 + OKGIIK_02105 0.20 +0.4
489,050 + OKGIIK_02105 0.20 +1.3
489,050 + OKGIIK_02105 0.20 +0.1
489,050 + OKGIIK_02105 0.20 +0.3
489,050 + OKGIIK_02105 0.20 +0.7
489,050 + OKGIIK_02105 0.20 -1.0
489,050 + OKGIIK_02105 0.20 +1.6
489,051 - OKGIIK_02105 0.20 -0.5
489,051 - OKGIIK_02105 0.20 +0.7
489,051 - OKGIIK_02105 0.20 +0.0
489,051 - OKGIIK_02105 0.20 +0.5
489,051 - OKGIIK_02105 0.20 -0.4
489,051 - OKGIIK_02105 0.20 -0.0
489,051 - OKGIIK_02105 0.20 -1.1
489,051 - OKGIIK_02105 0.20 -0.1
489,068 + OKGIIK_02105 0.21 +0.1
489,068 + OKGIIK_02105 0.21 -0.6
489,068 + OKGIIK_02105 0.21 +1.2
489,068 + OKGIIK_02105 0.21 +0.3
489,068 + OKGIIK_02105 0.21 +0.1
489,069 - OKGIIK_02105 0.21 -0.0
489,069 - OKGIIK_02105 0.21 +0.0
489,069 - OKGIIK_02105 0.21 +0.4
489,069 - OKGIIK_02105 0.21 +0.2
489,292 + OKGIIK_02105 0.38 +0.2
489,292 + OKGIIK_02105 0.38 +0.2
489,292 + OKGIIK_02105 0.38 +0.3
489,293 - OKGIIK_02105 0.38 +0.3
489,362 + OKGIIK_02105 0.43 -0.3
489,362 + OKGIIK_02105 0.43 +0.3
489,362 + OKGIIK_02105 0.43 +1.2
489,362 + OKGIIK_02105 0.43 +0.3
489,362 + OKGIIK_02105 0.43 -0.0
489,362 + OKGIIK_02105 0.43 +1.3
489,362 + OKGIIK_02105 0.43 -0.5
489,363 - OKGIIK_02105 0.43 +1.6
489,363 - OKGIIK_02105 0.43 +0.3
489,363 - OKGIIK_02105 0.43 +1.4
489,383 + OKGIIK_02105 0.45 +1.3
489,383 + OKGIIK_02105 0.45 +0.3
489,383 + OKGIIK_02105 0.45 -0.0
489,384 - OKGIIK_02105 0.45 -0.0
489,384 - OKGIIK_02105 0.45 -1.2
489,384 - OKGIIK_02105 0.45 -0.6
489,384 - OKGIIK_02105 0.45 +0.3
489,448 + OKGIIK_02105 0.50 -0.4
489,448 + OKGIIK_02105 0.50 -1.4
489,448 + OKGIIK_02105 0.50 -0.9
489,448 + OKGIIK_02105 0.50 -0.0
489,449 - OKGIIK_02105 0.50 +0.5
489,449 - OKGIIK_02105 0.50 +0.7
489,473 + OKGIIK_02105 0.52 +0.6
489,473 + OKGIIK_02105 0.52 -0.0
489,473 + OKGIIK_02105 0.52 +1.1
489,473 + OKGIIK_02105 0.52 +0.3
489,473 + OKGIIK_02105 0.52 +0.3
489,473 + OKGIIK_02105 0.52 -0.5
489,473 + OKGIIK_02105 0.52 -0.8
489,474 - OKGIIK_02105 0.52 +0.3
489,474 - OKGIIK_02105 0.52 -0.9
489,474 - OKGIIK_02105 0.52 -0.6
489,474 - OKGIIK_02105 0.52 -0.0
489,474 - OKGIIK_02105 0.52 -0.3
489,474 - OKGIIK_02105 0.52 -0.5
489,474 - OKGIIK_02105 0.52 +0.7
489,474 - OKGIIK_02105 0.52 -0.5
489,474 - OKGIIK_02105 0.52 -0.9
489,474 - OKGIIK_02105 0.52 -0.4
489,474 - OKGIIK_02105 0.52 +0.3
489,474 - OKGIIK_02105 0.52 -0.0
489,474 - OKGIIK_02105 0.52 +1.3
489,474 - OKGIIK_02105 0.52 +0.3
489,488 + OKGIIK_02105 0.53 -0.1
489,488 + OKGIIK_02105 0.53 -1.5
489,489 - OKGIIK_02105 0.53 -1.4

Or see this region's nucleotide sequence