Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02090 and OKGIIK_02095 are separated by 606 nucleotides OKGIIK_02095 and OKGIIK_02100 overlap by 4 nucleotides OKGIIK_02100 and OKGIIK_02105 are separated by 52 nucleotides
OKGIIK_02090: OKGIIK_02090 - hypothetical protein, at 483,445 to 485,343
_02090
OKGIIK_02095: OKGIIK_02095 - Aldehyde oxidase, at 485,950 to 488,202
_02095
OKGIIK_02100: OKGIIK_02100 - (2Fe-2S)-binding protein, at 488,199 to 488,735
_02100
OKGIIK_02105: OKGIIK_02105 - amino acid permease, at 488,788 to 490,113
_02105
Position (kb) 485
486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 485.110 kb on + strand, within OKGIIK_02090 at 485.110 kb on + strand, within OKGIIK_02090 at 485.110 kb on + strand, within OKGIIK_02090 at 485.110 kb on + strand, within OKGIIK_02090 at 485.111 kb on - strand, within OKGIIK_02090 at 485.111 kb on - strand, within OKGIIK_02090 at 485.111 kb on - strand, within OKGIIK_02090 at 485.111 kb on - strand, within OKGIIK_02090 at 485.111 kb on - strand, within OKGIIK_02090 at 485.279 kb on + strand at 485.280 kb on - strand at 485.403 kb on + strand at 485.404 kb on - strand at 485.404 kb on - strand at 485.404 kb on - strand at 485.404 kb on - strand at 485.459 kb on - strand at 485.524 kb on + strand at 485.524 kb on + strand at 485.524 kb on + strand at 485.524 kb on + strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.525 kb on - strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.561 kb on + strand at 485.562 kb on - strand at 485.562 kb on - strand at 485.562 kb on - strand at 485.562 kb on - strand at 485.562 kb on - strand at 485.585 kb on + strand at 485.585 kb on + strand at 485.610 kb on + strand at 485.610 kb on + strand at 485.610 kb on + strand at 485.611 kb on - strand at 485.611 kb on - strand at 485.611 kb on - strand at 485.611 kb on - strand at 485.611 kb on - strand at 485.649 kb on + strand at 485.649 kb on + strand at 485.649 kb on + strand at 485.650 kb on - strand at 485.749 kb on + strand at 485.749 kb on + strand at 485.749 kb on + strand at 485.750 kb on - strand at 485.750 kb on - strand at 485.750 kb on - strand at 485.750 kb on - strand at 485.750 kb on - strand at 485.750 kb on - strand at 485.800 kb on + strand at 485.800 kb on + strand at 485.801 kb on - strand at 485.801 kb on - strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.842 kb on + strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.843 kb on - strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.844 kb on + strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.845 kb on - strand at 485.884 kb on + strand at 485.885 kb on - strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.908 kb on + strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.909 kb on - strand at 485.951 kb on + strand at 485.951 kb on + strand at 485.952 kb on - strand at 485.952 kb on - strand at 485.952 kb on - strand at 485.952 kb on - strand at 486.153 kb on - strand at 486.350 kb on + strand, within OKGIIK_02095 at 486.350 kb on + strand, within OKGIIK_02095 at 486.351 kb on - strand, within OKGIIK_02095 at 486.351 kb on - strand, within OKGIIK_02095 at 486.351 kb on - strand, within OKGIIK_02095 at 486.351 kb on - strand, within OKGIIK_02095 at 486.351 kb on - strand, within OKGIIK_02095 at 486.647 kb on + strand, within OKGIIK_02095 at 486.648 kb on - strand, within OKGIIK_02095 at 486.663 kb on - strand, within OKGIIK_02095 at 486.663 kb on - strand, within OKGIIK_02095 at 486.663 kb on - strand, within OKGIIK_02095 at 486.663 kb on - strand, within OKGIIK_02095 at 486.839 kb on + strand, within OKGIIK_02095 at 486.840 kb on - strand, within OKGIIK_02095 at 486.840 kb on - strand, within OKGIIK_02095 at 486.929 kb on + strand, within OKGIIK_02095 at 486.929 kb on + strand, within OKGIIK_02095 at 486.929 kb on + strand, within OKGIIK_02095 at 486.929 kb on + strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 486.930 kb on - strand, within OKGIIK_02095 at 487.139 kb on + strand, within OKGIIK_02095 at 487.139 kb on + strand, within OKGIIK_02095 at 487.139 kb on + strand, within OKGIIK_02095 at 487.139 kb on + strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.140 kb on - strand, within OKGIIK_02095 at 487.523 kb on + strand, within OKGIIK_02095 at 487.523 kb on + strand, within OKGIIK_02095 at 487.524 kb on - strand, within OKGIIK_02095 at 487.524 kb on - strand, within OKGIIK_02095 at 487.524 kb on - strand, within OKGIIK_02095 at 487.524 kb on - strand, within OKGIIK_02095 at 487.524 kb on - strand, within OKGIIK_02095 at 487.541 kb on + strand, within OKGIIK_02095 at 487.715 kb on + strand, within OKGIIK_02095 at 487.715 kb on + strand, within OKGIIK_02095 at 488.048 kb on + strand at 488.049 kb on - strand at 488.049 kb on - strand at 488.049 kb on - strand at 488.049 kb on - strand at 488.049 kb on - strand at 488.049 kb on - strand at 488.366 kb on - strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.557 kb on + strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.558 kb on - strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.593 kb on + strand, within OKGIIK_02100 at 488.594 kb on - strand, within OKGIIK_02100 at 488.594 kb on - strand, within OKGIIK_02100 at 488.594 kb on - strand, within OKGIIK_02100 at 488.633 kb on - strand, within OKGIIK_02100 at 488.756 kb on + strand at 488.756 kb on + strand at 488.756 kb on + strand at 488.757 kb on - strand at 488.757 kb on - strand at 488.757 kb on - strand at 488.757 kb on - strand at 488.757 kb on - strand at 488.757 kb on - strand at 488.789 kb on + strand at 488.790 kb on - strand at 488.790 kb on - strand at 488.828 kb on + strand at 488.828 kb on + strand at 488.828 kb on + strand at 488.828 kb on + strand at 488.829 kb on - strand at 488.829 kb on - strand at 488.829 kb on - strand at 488.829 kb on - strand at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.050 kb on + strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.051 kb on - strand, within OKGIIK_02105 at 489.068 kb on + strand, within OKGIIK_02105 at 489.068 kb on + strand, within OKGIIK_02105 at 489.068 kb on + strand, within OKGIIK_02105 at 489.068 kb on + strand, within OKGIIK_02105 at 489.068 kb on + strand, within OKGIIK_02105 at 489.069 kb on - strand, within OKGIIK_02105 at 489.069 kb on - strand, within OKGIIK_02105 at 489.069 kb on - strand, within OKGIIK_02105 at 489.069 kb on - strand, within OKGIIK_02105
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 485,110 + OKGIIK_02090 0.88 -0.0 485,110 + OKGIIK_02090 0.88 +0.6 485,110 + OKGIIK_02090 0.88 -0.7 485,110 + OKGIIK_02090 0.88 -1.2 485,111 - OKGIIK_02090 0.88 -0.3 485,111 - OKGIIK_02090 0.88 -0.0 485,111 - OKGIIK_02090 0.88 -0.3 485,111 - OKGIIK_02090 0.88 -0.0 485,111 - OKGIIK_02090 0.88 -1.3 485,279 + -1.0 485,280 - +1.0 485,403 + -0.6 485,404 - -0.5 485,404 - +2.6 485,404 - +0.6 485,404 - +2.6 485,459 - +1.7 485,524 + -0.9 485,524 + +0.4 485,524 + +2.0 485,524 + -1.6 485,525 - -0.0 485,525 - -0.0 485,525 - +0.7 485,525 - +0.3 485,525 - +0.7 485,525 - -1.5 485,525 - -0.9 485,525 - -0.0 485,561 + -0.7 485,561 + +0.4 485,561 + -1.0 485,561 + -0.7 485,561 + -1.5 485,561 + +0.2 485,561 + -0.8 485,561 + -1.2 485,562 - -0.1 485,562 - -0.3 485,562 - -0.3 485,562 - -0.7 485,562 - -0.6 485,585 + -0.3 485,585 + +0.6 485,610 + -1.0 485,610 + +0.1 485,610 + -0.6 485,611 - +1.4 485,611 - -1.0 485,611 - +1.0 485,611 - +1.3 485,611 - -0.0 485,649 + +1.3 485,649 + -0.3 485,649 + -0.2 485,650 - +0.3 485,749 + -0.7 485,749 + +1.3 485,749 + +1.6 485,750 - -2.6 485,750 - +1.2 485,750 - -0.3 485,750 - -1.7 485,750 - +0.3 485,750 - -0.2 485,800 + +1.3 485,800 + -2.1 485,801 - +0.0 485,801 - +1.3 485,842 + -0.3 485,842 + +0.2 485,842 + -0.9 485,842 + +1.7 485,842 + +0.9 485,842 + +0.5 485,842 + -0.0 485,842 + +0.6 485,843 - -0.3 485,843 - -1.4 485,843 - +0.3 485,843 - +0.3 485,843 - -0.5 485,843 - +0.3 485,844 + +0.2 485,844 + -0.3 485,844 + +0.1 485,844 + +2.3 485,844 + -0.9 485,844 + -0.7 485,844 + -0.6 485,844 + +0.6 485,844 + -1.2 485,844 + +0.5 485,844 + -1.2 485,844 + -1.4 485,844 + -1.5 485,845 - -1.5 485,845 - +0.9 485,845 - +0.1 485,845 - -1.0 485,845 - -0.0 485,845 - -0.9 485,845 - +0.6 485,845 - -1.2 485,845 - -0.8 485,884 + -1.3 485,885 - -0.2 485,908 + -1.1 485,908 + -1.3 485,908 + +1.0 485,908 + +1.3 485,908 + +1.7 485,908 + -1.7 485,908 + +0.1 485,909 - -0.8 485,909 - +0.7 485,909 - +0.7 485,909 - -0.3 485,909 - -0.9 485,909 - -1.4 485,909 - +0.3 485,909 - +1.0 485,909 - -0.2 485,951 + +0.2 485,951 + +1.3 485,952 - +0.6 485,952 - -0.0 485,952 - -0.0 485,952 - -0.2 486,153 - +2.4 486,350 + OKGIIK_02095 0.18 +2.5 486,350 + OKGIIK_02095 0.18 +3.3 486,351 - OKGIIK_02095 0.18 +2.5 486,351 - OKGIIK_02095 0.18 +2.1 486,351 - OKGIIK_02095 0.18 +2.8 486,351 - OKGIIK_02095 0.18 +3.7 486,351 - OKGIIK_02095 0.18 +3.3 486,647 + OKGIIK_02095 0.31 +3.2 486,648 - OKGIIK_02095 0.31 +3.3 486,663 - OKGIIK_02095 0.32 +0.8 486,663 - OKGIIK_02095 0.32 +1.0 486,663 - OKGIIK_02095 0.32 +3.3 486,663 - OKGIIK_02095 0.32 +2.0 486,839 + OKGIIK_02095 0.39 +2.7 486,840 - OKGIIK_02095 0.40 +2.8 486,840 - OKGIIK_02095 0.40 +4.0 486,929 + OKGIIK_02095 0.43 +3.1 486,929 + OKGIIK_02095 0.43 +2.9 486,929 + OKGIIK_02095 0.43 +2.0 486,929 + OKGIIK_02095 0.43 +4.3 486,930 - OKGIIK_02095 0.43 +2.7 486,930 - OKGIIK_02095 0.43 +1.8 486,930 - OKGIIK_02095 0.43 +2.0 486,930 - OKGIIK_02095 0.43 +3.3 486,930 - OKGIIK_02095 0.43 +1.5 486,930 - OKGIIK_02095 0.43 +3.1 486,930 - OKGIIK_02095 0.43 +2.8 486,930 - OKGIIK_02095 0.43 +2.9 486,930 - OKGIIK_02095 0.43 +2.6 487,139 + OKGIIK_02095 0.53 +2.3 487,139 + OKGIIK_02095 0.53 +3.3 487,139 + OKGIIK_02095 0.53 +1.3 487,139 + OKGIIK_02095 0.53 +2.9 487,140 - OKGIIK_02095 0.53 +3.5 487,140 - OKGIIK_02095 0.53 +2.5 487,140 - OKGIIK_02095 0.53 +2.6 487,140 - OKGIIK_02095 0.53 +2.1 487,140 - OKGIIK_02095 0.53 +2.8 487,140 - OKGIIK_02095 0.53 +3.6 487,140 - OKGIIK_02095 0.53 +3.5 487,140 - OKGIIK_02095 0.53 +2.3 487,140 - OKGIIK_02095 0.53 +2.1 487,523 + OKGIIK_02095 0.70 +3.1 487,523 + OKGIIK_02095 0.70 +3.9 487,524 - OKGIIK_02095 0.70 +3.8 487,524 - OKGIIK_02095 0.70 +3.4 487,524 - OKGIIK_02095 0.70 +3.8 487,524 - OKGIIK_02095 0.70 +1.9 487,524 - OKGIIK_02095 0.70 +2.6 487,541 + OKGIIK_02095 0.71 +3.6 487,715 + OKGIIK_02095 0.78 +1.6 487,715 + OKGIIK_02095 0.78 +3.3 488,048 + +1.4 488,049 - +1.9 488,049 - +1.6 488,049 - +3.1 488,049 - +0.5 488,049 - +2.5 488,049 - +1.9 488,366 - OKGIIK_02100 0.31 +3.8 488,557 + OKGIIK_02100 0.67 +5.0 488,557 + OKGIIK_02100 0.67 +1.8 488,557 + OKGIIK_02100 0.67 +2.8 488,557 + OKGIIK_02100 0.67 +3.4 488,557 + OKGIIK_02100 0.67 +1.0 488,557 + OKGIIK_02100 0.67 +1.3 488,557 + OKGIIK_02100 0.67 +0.5 488,558 - OKGIIK_02100 0.67 +1.9 488,558 - OKGIIK_02100 0.67 +2.8 488,558 - OKGIIK_02100 0.67 +2.6 488,558 - OKGIIK_02100 0.67 +3.0 488,558 - OKGIIK_02100 0.67 +1.8 488,558 - OKGIIK_02100 0.67 +0.7 488,558 - OKGIIK_02100 0.67 -0.0 488,593 + OKGIIK_02100 0.73 +2.8 488,593 + OKGIIK_02100 0.73 +0.7 488,593 + OKGIIK_02100 0.73 +1.2 488,593 + OKGIIK_02100 0.73 +3.3 488,593 + OKGIIK_02100 0.73 +2.9 488,593 + OKGIIK_02100 0.73 +2.7 488,593 + OKGIIK_02100 0.73 +3.4 488,594 - OKGIIK_02100 0.74 +2.8 488,594 - OKGIIK_02100 0.74 +3.3 488,594 - OKGIIK_02100 0.74 +3.7 488,633 - OKGIIK_02100 0.81 +2.9 488,756 + +2.6 488,756 + +3.0 488,756 + +2.8 488,757 - +0.3 488,757 - +0.5 488,757 - -1.6 488,757 - -0.9 488,757 - +1.3 488,757 - +1.8 488,789 + +0.5 488,790 - -1.3 488,790 - +0.3 488,828 + +1.3 488,828 + -1.2 488,828 + +0.1 488,828 + +6.0 488,829 - +1.3 488,829 - +0.7 488,829 - -2.0 488,829 - +1.3 489,050 + OKGIIK_02105 0.20 +0.3 489,050 + OKGIIK_02105 0.20 +0.4 489,050 + OKGIIK_02105 0.20 +1.3 489,050 + OKGIIK_02105 0.20 +0.1 489,050 + OKGIIK_02105 0.20 +0.3 489,050 + OKGIIK_02105 0.20 +0.7 489,050 + OKGIIK_02105 0.20 -1.0 489,050 + OKGIIK_02105 0.20 +1.6 489,051 - OKGIIK_02105 0.20 -0.5 489,051 - OKGIIK_02105 0.20 +0.7 489,051 - OKGIIK_02105 0.20 +0.0 489,051 - OKGIIK_02105 0.20 +0.5 489,051 - OKGIIK_02105 0.20 -0.4 489,051 - OKGIIK_02105 0.20 -0.0 489,051 - OKGIIK_02105 0.20 -1.1 489,051 - OKGIIK_02105 0.20 -0.1 489,068 + OKGIIK_02105 0.21 +0.1 489,068 + OKGIIK_02105 0.21 -0.6 489,068 + OKGIIK_02105 0.21 +1.2 489,068 + OKGIIK_02105 0.21 +0.3 489,068 + OKGIIK_02105 0.21 +0.1 489,069 - OKGIIK_02105 0.21 -0.0 489,069 - OKGIIK_02105 0.21 +0.0 489,069 - OKGIIK_02105 0.21 +0.4 489,069 - OKGIIK_02105 0.21 +0.2
Or see this region's nucleotide sequence