Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01950

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01945 and tadA overlap by 4 nucleotidestadA and glnS are separated by 29 nucleotides OKGIIK_01945: OKGIIK_01945 - TVP38/TMEM64 family membrane protein, at 446,230 to 446,946 _01945 OKGIIK_01950: tadA - nucleoside deaminase, at 446,943 to 447,503 tadA OKGIIK_01955: glnS - glutamine--tRNA ligase/YqeY domain fusion protein, at 447,533 to 449,338 glnS Position (kb) 446 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 445.986 kb on + strandat 445.986 kb on + strandat 445.986 kb on + strandat 445.987 kb on - strandat 445.987 kb on - strandat 446.030 kb on - strandat 446.202 kb on + strandat 446.203 kb on - strandat 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.329 kb on + strand, within OKGIIK_01945at 446.330 kb on - strand, within OKGIIK_01945at 446.330 kb on - strand, within OKGIIK_01945at 446.330 kb on - strand, within OKGIIK_01945at 446.541 kb on + strand, within OKGIIK_01945at 446.541 kb on + strand, within OKGIIK_01945at 446.541 kb on + strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.542 kb on - strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.543 kb on + strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.544 kb on - strand, within OKGIIK_01945at 446.625 kb on - strand, within OKGIIK_01945at 446.678 kb on + strand, within OKGIIK_01945at 446.678 kb on + strand, within OKGIIK_01945at 446.678 kb on + strand, within OKGIIK_01945at 446.679 kb on - strand, within OKGIIK_01945at 446.679 kb on - strand, within OKGIIK_01945at 446.679 kb on - strand, within OKGIIK_01945at 446.679 kb on - strand, within OKGIIK_01945at 446.679 kb on - strand, within OKGIIK_01945at 446.780 kb on + strand, within OKGIIK_01945at 446.780 kb on + strand, within OKGIIK_01945at 446.780 kb on + strand, within OKGIIK_01945at 446.780 kb on + strand, within OKGIIK_01945at 446.780 kb on + strand, within OKGIIK_01945at 446.781 kb on - strand, within OKGIIK_01945at 446.781 kb on - strand, within OKGIIK_01945at 446.947 kb on + strandat 446.948 kb on - strandat 446.948 kb on - strandat 446.968 kb on + strandat 446.968 kb on + strandat 446.968 kb on + strandat 446.968 kb on + strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.969 kb on - strandat 446.979 kb on + strandat 446.979 kb on + strandat 446.979 kb on + strandat 446.980 kb on - strandat 446.980 kb on - strandat 446.980 kb on - strandat 447.154 kb on + strand, within tadAat 447.154 kb on + strand, within tadAat 447.155 kb on - strand, within tadAat 447.193 kb on + strand, within tadAat 447.193 kb on + strand, within tadAat 447.193 kb on + strand, within tadAat 447.193 kb on + strand, within tadAat 447.193 kb on + strand, within tadAat 447.193 kb on + strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.194 kb on - strand, within tadAat 447.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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445,986 + +0.5
445,986 + -0.4
445,986 + -0.0
445,987 - +1.3
445,987 - +0.7
446,030 - +0.3
446,202 + -0.7
446,203 - +2.6
446,329 + OKGIIK_01945 0.14 +1.5
446,329 + OKGIIK_01945 0.14 +0.3
446,329 + OKGIIK_01945 0.14 +2.6
446,329 + OKGIIK_01945 0.14 -0.3
446,329 + OKGIIK_01945 0.14 +0.3
446,329 + OKGIIK_01945 0.14 -0.0
446,329 + OKGIIK_01945 0.14 -0.5
446,329 + OKGIIK_01945 0.14 +1.1
446,329 + OKGIIK_01945 0.14 -0.3
446,330 - OKGIIK_01945 0.14 -0.7
446,330 - OKGIIK_01945 0.14 +1.2
446,330 - OKGIIK_01945 0.14 -0.9
446,541 + OKGIIK_01945 0.43 +0.5
446,541 + OKGIIK_01945 0.43 -0.6
446,541 + OKGIIK_01945 0.43 -0.5
446,542 - OKGIIK_01945 0.44 -0.2
446,542 - OKGIIK_01945 0.44 +0.8
446,542 - OKGIIK_01945 0.44 -1.0
446,542 - OKGIIK_01945 0.44 +2.5
446,542 - OKGIIK_01945 0.44 -1.4
446,542 - OKGIIK_01945 0.44 -2.5
446,542 - OKGIIK_01945 0.44 +1.1
446,542 - OKGIIK_01945 0.44 -1.3
446,542 - OKGIIK_01945 0.44 -0.3
446,543 + OKGIIK_01945 0.44 +1.7
446,543 + OKGIIK_01945 0.44 +1.9
446,543 + OKGIIK_01945 0.44 +3.0
446,543 + OKGIIK_01945 0.44 -0.7
446,543 + OKGIIK_01945 0.44 -0.5
446,543 + OKGIIK_01945 0.44 +0.1
446,543 + OKGIIK_01945 0.44 +0.2
446,543 + OKGIIK_01945 0.44 +1.3
446,543 + OKGIIK_01945 0.44 +0.7
446,543 + OKGIIK_01945 0.44 +1.0
446,543 + OKGIIK_01945 0.44 -0.9
446,543 + OKGIIK_01945 0.44 -1.5
446,543 + OKGIIK_01945 0.44 +0.7
446,543 + OKGIIK_01945 0.44 +0.3
446,543 + OKGIIK_01945 0.44 -0.0
446,543 + OKGIIK_01945 0.44 +0.2
446,543 + OKGIIK_01945 0.44 -0.1
446,543 + OKGIIK_01945 0.44 +0.1
446,543 + OKGIIK_01945 0.44 -0.7
446,543 + OKGIIK_01945 0.44 +0.5
446,543 + OKGIIK_01945 0.44 +0.5
446,543 + OKGIIK_01945 0.44 -0.3
446,543 + OKGIIK_01945 0.44 +0.3
446,544 - OKGIIK_01945 0.44 +1.3
446,544 - OKGIIK_01945 0.44 +0.3
446,544 - OKGIIK_01945 0.44 +0.3
446,544 - OKGIIK_01945 0.44 +0.3
446,544 - OKGIIK_01945 0.44 -0.1
446,544 - OKGIIK_01945 0.44 -1.4
446,544 - OKGIIK_01945 0.44 +1.3
446,544 - OKGIIK_01945 0.44 +0.8
446,544 - OKGIIK_01945 0.44 +0.4
446,544 - OKGIIK_01945 0.44 -3.0
446,544 - OKGIIK_01945 0.44 +0.2
446,544 - OKGIIK_01945 0.44 -0.2
446,544 - OKGIIK_01945 0.44 -0.9
446,544 - OKGIIK_01945 0.44 +1.3
446,544 - OKGIIK_01945 0.44 +1.9
446,544 - OKGIIK_01945 0.44 -0.3
446,544 - OKGIIK_01945 0.44 +2.3
446,544 - OKGIIK_01945 0.44 +0.7
446,544 - OKGIIK_01945 0.44 -0.0
446,544 - OKGIIK_01945 0.44 +0.1
446,544 - OKGIIK_01945 0.44 +0.1
446,544 - OKGIIK_01945 0.44 +2.0
446,544 - OKGIIK_01945 0.44 -0.7
446,544 - OKGIIK_01945 0.44 -0.0
446,544 - OKGIIK_01945 0.44 +0.3
446,544 - OKGIIK_01945 0.44 +1.0
446,544 - OKGIIK_01945 0.44 -1.5
446,544 - OKGIIK_01945 0.44 -0.4
446,544 - OKGIIK_01945 0.44 +1.1
446,544 - OKGIIK_01945 0.44 -0.6
446,544 - OKGIIK_01945 0.44 -0.1
446,544 - OKGIIK_01945 0.44 -0.6
446,544 - OKGIIK_01945 0.44 -0.5
446,544 - OKGIIK_01945 0.44 +2.0
446,625 - OKGIIK_01945 0.55 +0.6
446,678 + OKGIIK_01945 0.62 -1.8
446,678 + OKGIIK_01945 0.62 -0.7
446,678 + OKGIIK_01945 0.62 -2.2
446,679 - OKGIIK_01945 0.63 -1.9
446,679 - OKGIIK_01945 0.63 -1.2
446,679 - OKGIIK_01945 0.63 +1.8
446,679 - OKGIIK_01945 0.63 -1.2
446,679 - OKGIIK_01945 0.63 +2.0
446,780 + OKGIIK_01945 0.77 -1.7
446,780 + OKGIIK_01945 0.77 -1.0
446,780 + OKGIIK_01945 0.77 +1.5
446,780 + OKGIIK_01945 0.77 -0.2
446,780 + OKGIIK_01945 0.77 -1.0
446,781 - OKGIIK_01945 0.77 -0.9
446,781 - OKGIIK_01945 0.77 -0.0
446,947 + -0.7
446,948 - -0.3
446,948 - +0.3
446,968 + +0.4
446,968 + -1.5
446,968 + +1.6
446,968 + +1.6
446,969 - -0.0
446,969 - -1.1
446,969 - -0.2
446,969 - +0.9
446,969 - -0.9
446,969 - -0.5
446,969 - +0.5
446,969 - +1.7
446,969 - -0.0
446,979 + +0.5
446,979 + -2.2
446,979 + -1.6
446,980 - +0.5
446,980 - -1.3
446,980 - +0.2
447,154 + tadA OKGIIK_01950 0.38 -0.0
447,154 + tadA OKGIIK_01950 0.38 +0.1
447,155 - tadA OKGIIK_01950 0.38 -0.0
447,193 + tadA OKGIIK_01950 0.45 -1.4
447,193 + tadA OKGIIK_01950 0.45 +0.5
447,193 + tadA OKGIIK_01950 0.45 +1.4
447,193 + tadA OKGIIK_01950 0.45 +0.3
447,193 + tadA OKGIIK_01950 0.45 +0.3
447,193 + tadA OKGIIK_01950 0.45 +2.1
447,194 - tadA OKGIIK_01950 0.45 -1.5
447,194 - tadA OKGIIK_01950 0.45 +0.3
447,194 - tadA OKGIIK_01950 0.45 -0.5
447,194 - tadA OKGIIK_01950 0.45 -1.0
447,194 - tadA OKGIIK_01950 0.45 -0.8
447,194 - tadA OKGIIK_01950 0.45 +1.6
447,194 - tadA OKGIIK_01950 0.45 -0.5
447,194 - tadA OKGIIK_01950 0.45 +1.6
447,194 - tadA OKGIIK_01950 0.45 +2.3
447,534 + -0.8

Or see this region's nucleotide sequence