Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01785 and rluD are separated by 71 nucleotides rluD and pgeF are separated by 70 nucleotides pgeF and clpB are separated by 126 nucleotides
OKGIIK_01785: OKGIIK_01785 - Outer membrane protein assembly factor BamD, at 413,494 to 414,360
_01785
OKGIIK_01790: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 414,432 to 415,406
rluD
OKGIIK_01795: pgeF - peptidoglycan editing factor PgeF, at 415,477 to 416,226
pgeF
OKGIIK_01800: clpB - ATP-dependent chaperone ClpB, at 416,353 to 418,944
clpB
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.444 kb on + strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 413.445 kb on - strand at 414.399 kb on - strand at 414.520 kb on - strand at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.649 kb on + strand, within rluD at 414.650 kb on - strand, within rluD at 414.650 kb on - strand, within rluD at 414.888 kb on + strand, within rluD at 414.889 kb on - strand, within rluD at 414.889 kb on - strand, within rluD at 414.936 kb on + strand, within rluD at 414.936 kb on + strand, within rluD at 414.937 kb on - strand, within rluD at 414.937 kb on - strand, within rluD at 415.188 kb on + strand, within rluD at 415.189 kb on - strand, within rluD at 415.189 kb on - strand, within rluD at 415.189 kb on - strand, within rluD at 415.401 kb on + strand at 415.401 kb on + strand at 415.401 kb on + strand at 415.401 kb on + strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.402 kb on - strand at 415.486 kb on - strand at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.767 kb on + strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.768 kb on - strand, within pgeF at 415.969 kb on + strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 415.970 kb on - strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.113 kb on + strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.114 kb on - strand, within pgeF at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.158 kb on + strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.159 kb on - strand at 416.164 kb on + strand at 416.165 kb on - strand at 416.295 kb on - strand at 416.295 kb on - strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.348 kb on + strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand at 416.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 413,444 + -0.4 413,444 + +1.0 413,444 + -1.0 413,444 + -1.7 413,444 + -0.6 413,444 + -0.7 413,444 + -1.9 413,444 + +1.2 413,444 + -1.7 413,444 + +0.0 413,444 + -1.6 413,444 + +1.0 413,444 + -1.8 413,444 + -2.0 413,444 + -0.7 413,444 + -0.3 413,444 + +0.3 413,445 - -1.1 413,445 - -1.4 413,445 - +0.0 413,445 - -1.6 413,445 - +1.2 413,445 - -0.7 413,445 - +1.6 413,445 - -0.3 413,445 - -2.0 413,445 - -0.4 413,445 - +0.0 413,445 - -0.2 413,445 - -2.4 413,445 - +0.1 413,445 - -1.6 413,445 - -0.5 414,399 - -1.0 414,520 - -0.7 414,649 + rluD OKGIIK_01790 0.22 -2.7 414,649 + rluD OKGIIK_01790 0.22 -1.4 414,649 + rluD OKGIIK_01790 0.22 -1.6 414,649 + rluD OKGIIK_01790 0.22 -1.0 414,649 + rluD OKGIIK_01790 0.22 -0.4 414,649 + rluD OKGIIK_01790 0.22 -1.0 414,649 + rluD OKGIIK_01790 0.22 -0.7 414,649 + rluD OKGIIK_01790 0.22 -1.1 414,650 - rluD OKGIIK_01790 0.22 -2.6 414,650 - rluD OKGIIK_01790 0.22 -2.1 414,888 + rluD OKGIIK_01790 0.47 -1.4 414,889 - rluD OKGIIK_01790 0.47 -1.0 414,889 - rluD OKGIIK_01790 0.47 -0.4 414,936 + rluD OKGIIK_01790 0.52 -1.5 414,936 + rluD OKGIIK_01790 0.52 -1.4 414,937 - rluD OKGIIK_01790 0.52 -2.3 414,937 - rluD OKGIIK_01790 0.52 -1.4 415,188 + rluD OKGIIK_01790 0.78 -3.3 415,189 - rluD OKGIIK_01790 0.78 -1.6 415,189 - rluD OKGIIK_01790 0.78 -1.0 415,189 - rluD OKGIIK_01790 0.78 -1.7 415,401 + -1.1 415,401 + -0.7 415,401 + +1.9 415,401 + -0.7 415,402 - -0.6 415,402 - +0.0 415,402 - -2.0 415,402 - -0.7 415,402 - -2.1 415,402 - +0.6 415,486 - -0.4 415,767 + pgeF OKGIIK_01795 0.39 -2.4 415,767 + pgeF OKGIIK_01795 0.39 -0.7 415,767 + pgeF OKGIIK_01795 0.39 -0.7 415,767 + pgeF OKGIIK_01795 0.39 -2.0 415,767 + pgeF OKGIIK_01795 0.39 -0.1 415,767 + pgeF OKGIIK_01795 0.39 -2.0 415,767 + pgeF OKGIIK_01795 0.39 -1.4 415,768 - pgeF OKGIIK_01795 0.39 +0.2 415,768 - pgeF OKGIIK_01795 0.39 -1.4 415,768 - pgeF OKGIIK_01795 0.39 -0.7 415,768 - pgeF OKGIIK_01795 0.39 +0.1 415,768 - pgeF OKGIIK_01795 0.39 -1.7 415,768 - pgeF OKGIIK_01795 0.39 -0.2 415,768 - pgeF OKGIIK_01795 0.39 -1.0 415,768 - pgeF OKGIIK_01795 0.39 -0.7 415,768 - pgeF OKGIIK_01795 0.39 -1.9 415,768 - pgeF OKGIIK_01795 0.39 -0.4 415,768 - pgeF OKGIIK_01795 0.39 -0.7 415,969 + pgeF OKGIIK_01795 0.66 -0.6 415,970 - pgeF OKGIIK_01795 0.66 -0.4 415,970 - pgeF OKGIIK_01795 0.66 -0.2 415,970 - pgeF OKGIIK_01795 0.66 -1.4 415,970 - pgeF OKGIIK_01795 0.66 -0.7 415,970 - pgeF OKGIIK_01795 0.66 +0.4 415,970 - pgeF OKGIIK_01795 0.66 +0.0 415,970 - pgeF OKGIIK_01795 0.66 -1.3 415,970 - pgeF OKGIIK_01795 0.66 +0.4 415,970 - pgeF OKGIIK_01795 0.66 -1.0 415,970 - pgeF OKGIIK_01795 0.66 -2.3 416,113 + pgeF OKGIIK_01795 0.85 -2.5 416,113 + pgeF OKGIIK_01795 0.85 -1.4 416,113 + pgeF OKGIIK_01795 0.85 -0.9 416,113 + pgeF OKGIIK_01795 0.85 +1.1 416,113 + pgeF OKGIIK_01795 0.85 +0.8 416,113 + pgeF OKGIIK_01795 0.85 -0.4 416,113 + pgeF OKGIIK_01795 0.85 -0.4 416,113 + pgeF OKGIIK_01795 0.85 -0.4 416,114 - pgeF OKGIIK_01795 0.85 -0.7 416,114 - pgeF OKGIIK_01795 0.85 -0.4 416,114 - pgeF OKGIIK_01795 0.85 +0.6 416,114 - pgeF OKGIIK_01795 0.85 -2.3 416,114 - pgeF OKGIIK_01795 0.85 +0.6 416,114 - pgeF OKGIIK_01795 0.85 -0.7 416,114 - pgeF OKGIIK_01795 0.85 -2.4 416,114 - pgeF OKGIIK_01795 0.85 -2.5 416,114 - pgeF OKGIIK_01795 0.85 -1.4 416,114 - pgeF OKGIIK_01795 0.85 +0.0 416,114 - pgeF OKGIIK_01795 0.85 -0.9 416,114 - pgeF OKGIIK_01795 0.85 -1.6 416,114 - pgeF OKGIIK_01795 0.85 -0.6 416,114 - pgeF OKGIIK_01795 0.85 -2.6 416,114 - pgeF OKGIIK_01795 0.85 +1.9 416,114 - pgeF OKGIIK_01795 0.85 -0.4 416,114 - pgeF OKGIIK_01795 0.85 -0.7 416,158 + -1.0 416,158 + -0.6 416,158 + -1.0 416,158 + -1.2 416,158 + +1.1 416,158 + -1.7 416,158 + -0.1 416,158 + -0.7 416,158 + -0.3 416,158 + +0.0 416,158 + -1.0 416,158 + -0.4 416,159 - -1.6 416,159 - -2.6 416,159 - -0.4 416,159 - +0.0 416,159 - -0.4 416,164 + -0.4 416,165 - -1.6 416,295 - +1.3 416,295 - -1.4 416,348 + -0.7 416,348 + -0.7 416,348 + -1.0 416,348 + -0.3 416,348 + -1.2 416,348 + -2.3 416,348 + -1.2 416,348 + -0.9 416,348 + -0.2 416,348 + -0.4 416,348 + -0.4 416,348 + -0.4 416,349 - -1.0 416,349 - -1.0 416,349 - -0.4 416,349 - -1.2 416,349 - -1.0 416,349 - +0.6 416,349 - -0.7 416,349 - -1.0 416,349 - +1.6 416,349 - +0.0 416,349 - -1.6 416,349 - +0.0 416,349 - +0.6
Or see this region's nucleotide sequence