Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01705 and ompR are separated by 2 nucleotides ompR and OKGIIK_01715 are separated by 4 nucleotides
OKGIIK_01705: OKGIIK_01705 - Histidine kinase, at 389,130 to 390,896
_01705
OKGIIK_01710: ompR - two-component system response regulator, at 390,899 to 391,345
ompR
OKGIIK_01715: OKGIIK_01715 - Histidine kinase, at 391,350 to 392,993
_01715
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 390.000 kb on + strand, within OKGIIK_01705 at 390.000 kb on + strand, within OKGIIK_01705 at 390.000 kb on + strand, within OKGIIK_01705 at 390.001 kb on - strand, within OKGIIK_01705 at 390.001 kb on - strand, within OKGIIK_01705 at 390.001 kb on - strand, within OKGIIK_01705 at 390.219 kb on + strand, within OKGIIK_01705 at 390.219 kb on + strand, within OKGIIK_01705 at 390.220 kb on - strand, within OKGIIK_01705 at 390.220 kb on - strand, within OKGIIK_01705 at 390.220 kb on - strand, within OKGIIK_01705 at 390.324 kb on + strand, within OKGIIK_01705 at 390.324 kb on + strand, within OKGIIK_01705 at 390.324 kb on + strand, within OKGIIK_01705 at 390.324 kb on + strand, within OKGIIK_01705 at 390.325 kb on - strand, within OKGIIK_01705 at 390.325 kb on - strand, within OKGIIK_01705 at 390.325 kb on - strand, within OKGIIK_01705 at 390.554 kb on - strand, within OKGIIK_01705 at 390.585 kb on + strand, within OKGIIK_01705 at 390.585 kb on + strand, within OKGIIK_01705 at 390.585 kb on + strand, within OKGIIK_01705 at 390.585 kb on + strand, within OKGIIK_01705 at 390.586 kb on - strand, within OKGIIK_01705 at 390.586 kb on - strand, within OKGIIK_01705 at 390.586 kb on - strand, within OKGIIK_01705 at 390.586 kb on - strand, within OKGIIK_01705 at 390.586 kb on - strand, within OKGIIK_01705 at 390.648 kb on + strand, within OKGIIK_01705 at 390.648 kb on + strand, within OKGIIK_01705 at 390.649 kb on - strand, within OKGIIK_01705 at 390.693 kb on + strand, within OKGIIK_01705 at 390.694 kb on - strand, within OKGIIK_01705 at 390.694 kb on - strand, within OKGIIK_01705 at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.884 kb on + strand at 390.885 kb on - strand at 390.885 kb on - strand at 390.885 kb on - strand at 390.885 kb on - strand at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.037 kb on + strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.038 kb on - strand, within ompR at 391.043 kb on + strand, within ompR at 391.043 kb on + strand, within ompR at 391.043 kb on + strand, within ompR at 391.043 kb on + strand, within ompR at 391.044 kb on - strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.247 kb on + strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.248 kb on - strand, within ompR at 391.418 kb on + strand at 391.418 kb on + strand at 391.418 kb on + strand at 391.418 kb on + strand at 391.418 kb on + strand at 391.418 kb on + strand at 391.419 kb on - strand at 391.419 kb on - strand at 391.419 kb on - strand at 391.419 kb on - strand at 391.419 kb on - strand at 391.419 kb on - strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.424 kb on + strand at 391.425 kb on - strand at 391.425 kb on - strand at 391.425 kb on - strand at 391.425 kb on - strand at 391.425 kb on - strand at 391.425 kb on - strand at 391.537 kb on - strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.755 kb on + strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.756 kb on - strand, within OKGIIK_01715 at 391.937 kb on - strand, within OKGIIK_01715 at 391.937 kb on - strand, within OKGIIK_01715 at 391.965 kb on + strand, within OKGIIK_01715 at 391.965 kb on + strand, within OKGIIK_01715 at 391.965 kb on + strand, within OKGIIK_01715 at 391.965 kb on + strand, within OKGIIK_01715 at 391.965 kb on + strand, within OKGIIK_01715 at 391.966 kb on - strand, within OKGIIK_01715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 390,000 + OKGIIK_01705 0.49 -1.8 390,000 + OKGIIK_01705 0.49 +0.3 390,000 + OKGIIK_01705 0.49 +1.5 390,001 - OKGIIK_01705 0.49 -0.6 390,001 - OKGIIK_01705 0.49 +1.3 390,001 - OKGIIK_01705 0.49 +2.8 390,219 + OKGIIK_01705 0.62 -1.8 390,219 + OKGIIK_01705 0.62 -1.1 390,220 - OKGIIK_01705 0.62 +0.3 390,220 - OKGIIK_01705 0.62 +0.3 390,220 - OKGIIK_01705 0.62 -0.5 390,324 + OKGIIK_01705 0.68 -1.0 390,324 + OKGIIK_01705 0.68 -0.3 390,324 + OKGIIK_01705 0.68 -0.6 390,324 + OKGIIK_01705 0.68 -0.5 390,325 - OKGIIK_01705 0.68 +0.1 390,325 - OKGIIK_01705 0.68 -1.8 390,325 - OKGIIK_01705 0.68 +1.0 390,554 - OKGIIK_01705 0.81 -0.3 390,585 + OKGIIK_01705 0.82 +0.3 390,585 + OKGIIK_01705 0.82 -1.6 390,585 + OKGIIK_01705 0.82 -0.0 390,585 + OKGIIK_01705 0.82 +0.7 390,586 - OKGIIK_01705 0.82 +0.7 390,586 - OKGIIK_01705 0.82 -1.1 390,586 - OKGIIK_01705 0.82 -0.9 390,586 - OKGIIK_01705 0.82 -0.0 390,586 - OKGIIK_01705 0.82 -0.3 390,648 + OKGIIK_01705 0.86 -0.0 390,648 + OKGIIK_01705 0.86 +0.2 390,649 - OKGIIK_01705 0.86 +0.4 390,693 + OKGIIK_01705 0.88 -0.3 390,694 - OKGIIK_01705 0.89 -0.5 390,694 - OKGIIK_01705 0.89 -0.9 390,884 + +1.3 390,884 + +1.3 390,884 + -0.9 390,884 + -0.0 390,884 + -1.3 390,884 + +1.9 390,884 + +1.5 390,884 + -0.1 390,884 + +0.1 390,884 + -0.3 390,885 - +1.9 390,885 - -0.0 390,885 - -2.1 390,885 - +1.0 391,037 + ompR OKGIIK_01710 0.31 -2.0 391,037 + ompR OKGIIK_01710 0.31 +1.8 391,037 + ompR OKGIIK_01710 0.31 +2.0 391,037 + ompR OKGIIK_01710 0.31 +0.3 391,037 + ompR OKGIIK_01710 0.31 +0.3 391,037 + ompR OKGIIK_01710 0.31 +0.9 391,037 + ompR OKGIIK_01710 0.31 -0.5 391,038 - ompR OKGIIK_01710 0.31 -0.0 391,038 - ompR OKGIIK_01710 0.31 +0.5 391,038 - ompR OKGIIK_01710 0.31 -1.7 391,038 - ompR OKGIIK_01710 0.31 -1.1 391,038 - ompR OKGIIK_01710 0.31 +0.3 391,038 - ompR OKGIIK_01710 0.31 +0.2 391,038 - ompR OKGIIK_01710 0.31 -1.0 391,038 - ompR OKGIIK_01710 0.31 +1.1 391,043 + ompR OKGIIK_01710 0.32 +0.9 391,043 + ompR OKGIIK_01710 0.32 +0.4 391,043 + ompR OKGIIK_01710 0.32 +0.9 391,043 + ompR OKGIIK_01710 0.32 +0.1 391,044 - ompR OKGIIK_01710 0.32 -0.7 391,247 + ompR OKGIIK_01710 0.78 -0.3 391,247 + ompR OKGIIK_01710 0.78 +0.7 391,247 + ompR OKGIIK_01710 0.78 +1.2 391,247 + ompR OKGIIK_01710 0.78 -2.1 391,247 + ompR OKGIIK_01710 0.78 +0.2 391,247 + ompR OKGIIK_01710 0.78 -0.3 391,247 + ompR OKGIIK_01710 0.78 -1.1 391,247 + ompR OKGIIK_01710 0.78 +0.7 391,247 + ompR OKGIIK_01710 0.78 +1.0 391,247 + ompR OKGIIK_01710 0.78 -0.6 391,247 + ompR OKGIIK_01710 0.78 +0.6 391,247 + ompR OKGIIK_01710 0.78 +1.8 391,247 + ompR OKGIIK_01710 0.78 -0.3 391,247 + ompR OKGIIK_01710 0.78 +1.0 391,248 - ompR OKGIIK_01710 0.78 +1.1 391,248 - ompR OKGIIK_01710 0.78 -2.8 391,248 - ompR OKGIIK_01710 0.78 -0.4 391,248 - ompR OKGIIK_01710 0.78 -0.2 391,248 - ompR OKGIIK_01710 0.78 +1.6 391,248 - ompR OKGIIK_01710 0.78 +1.1 391,248 - ompR OKGIIK_01710 0.78 -0.9 391,248 - ompR OKGIIK_01710 0.78 +0.3 391,248 - ompR OKGIIK_01710 0.78 +1.0 391,248 - ompR OKGIIK_01710 0.78 -0.6 391,248 - ompR OKGIIK_01710 0.78 +0.2 391,418 + +0.3 391,418 + +0.3 391,418 + -0.9 391,418 + +1.0 391,418 + +1.1 391,418 + -1.1 391,419 - -1.1 391,419 - +0.3 391,419 - -0.0 391,419 - -1.0 391,419 - -0.9 391,419 - +0.2 391,424 + -0.3 391,424 + -1.6 391,424 + +0.8 391,424 + +2.3 391,424 + +0.4 391,424 + -0.7 391,424 + +2.3 391,424 + -0.2 391,424 + -0.0 391,424 + -0.7 391,425 - -0.6 391,425 - -1.7 391,425 - -0.8 391,425 - -0.0 391,425 - -1.1 391,425 - -0.7 391,537 - OKGIIK_01715 0.11 +1.5 391,755 + OKGIIK_01715 0.25 +1.6 391,755 + OKGIIK_01715 0.25 +0.5 391,755 + OKGIIK_01715 0.25 -0.1 391,755 + OKGIIK_01715 0.25 -0.9 391,755 + OKGIIK_01715 0.25 +0.3 391,755 + OKGIIK_01715 0.25 -1.8 391,755 + OKGIIK_01715 0.25 -0.1 391,755 + OKGIIK_01715 0.25 -1.4 391,756 - OKGIIK_01715 0.25 -1.9 391,756 - OKGIIK_01715 0.25 -0.1 391,756 - OKGIIK_01715 0.25 -2.0 391,756 - OKGIIK_01715 0.25 -0.7 391,756 - OKGIIK_01715 0.25 -0.3 391,756 - OKGIIK_01715 0.25 +0.3 391,756 - OKGIIK_01715 0.25 -0.8 391,756 - OKGIIK_01715 0.25 +0.5 391,937 - OKGIIK_01715 0.36 -0.3 391,937 - OKGIIK_01715 0.36 -0.5 391,965 + OKGIIK_01715 0.37 -0.7 391,965 + OKGIIK_01715 0.37 -1.7 391,965 + OKGIIK_01715 0.37 -1.4 391,965 + OKGIIK_01715 0.37 +0.3 391,965 + OKGIIK_01715 0.37 +0.9 391,966 - OKGIIK_01715 0.37 -0.0
Or see this region's nucleotide sequence