Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01610

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01605 and OKGIIK_01610 are separated by 95 nucleotidesOKGIIK_01610 and OKGIIK_01615 are separated by 165 nucleotidesOKGIIK_01615 and OKGIIK_01620 are separated by 84 nucleotides OKGIIK_01605: OKGIIK_01605 - putative arabinose efflux permease, MFS family, at 363,803 to 365,077 _01605 OKGIIK_01610: OKGIIK_01610 - Sulfurtransferase, at 365,173 to 366,153 _01610 OKGIIK_01615: OKGIIK_01615 - Single-stranded DNA-binding protein, at 366,319 to 366,819 _01615 OKGIIK_01620: OKGIIK_01620 - AraC family transcriptional regulator, at 366,904 to 367,614 _01620 Position (kb) 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.197 kb on + strand, within OKGIIK_01605at 364.197 kb on + strand, within OKGIIK_01605at 364.197 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.893 kb on - strand, within OKGIIK_01605at 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.076 kb on - strandat 365.076 kb on - strandat 365.076 kb on - strandat 365.083 kb on + strandat 365.083 kb on + strandat 365.084 kb on - strandat 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.378 kb on - strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.809 kb on + strand, within OKGIIK_01610at 365.810 kb on - strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610at 366.196 kb on + strandat 366.196 kb on + strandat 366.197 kb on - strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.244 kb on - strandat 366.244 kb on - strandat 366.244 kb on - strandat 366.248 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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364,197 + OKGIIK_01605 0.31 +1.3
364,197 + OKGIIK_01605 0.31 +1.7
364,197 + OKGIIK_01605 0.31 +1.3
364,622 + OKGIIK_01605 0.64 -1.0
364,622 + OKGIIK_01605 0.64 -1.9
364,622 + OKGIIK_01605 0.64 +0.3
364,622 + OKGIIK_01605 0.64 +1.3
364,622 + OKGIIK_01605 0.64 -0.3
364,622 + OKGIIK_01605 0.64 +0.9
364,622 + OKGIIK_01605 0.64 -0.3
364,622 + OKGIIK_01605 0.64 -1.7
364,622 + OKGIIK_01605 0.64 +2.1
364,622 + OKGIIK_01605 0.64 +0.4
364,622 + OKGIIK_01605 0.64 +0.5
364,623 - OKGIIK_01605 0.64 -2.5
364,623 - OKGIIK_01605 0.64 -1.0
364,623 - OKGIIK_01605 0.64 -0.0
364,623 - OKGIIK_01605 0.64 +0.3
364,623 - OKGIIK_01605 0.64 +1.6
364,623 - OKGIIK_01605 0.64 -0.3
364,623 - OKGIIK_01605 0.64 +1.3
364,623 - OKGIIK_01605 0.64 +0.6
364,623 - OKGIIK_01605 0.64 +0.3
364,623 - OKGIIK_01605 0.64 +0.3
364,623 - OKGIIK_01605 0.64 -0.5
364,623 - OKGIIK_01605 0.64 +2.5
364,673 + OKGIIK_01605 0.68 -0.9
364,673 + OKGIIK_01605 0.68 +0.1
364,673 + OKGIIK_01605 0.68 +0.3
364,673 + OKGIIK_01605 0.68 -0.3
364,673 + OKGIIK_01605 0.68 -0.2
364,673 + OKGIIK_01605 0.68 -0.7
364,673 + OKGIIK_01605 0.68 -0.3
364,673 + OKGIIK_01605 0.68 -0.2
364,673 + OKGIIK_01605 0.68 -1.6
364,673 + OKGIIK_01605 0.68 +0.7
364,673 + OKGIIK_01605 0.68 -0.5
364,673 + OKGIIK_01605 0.68 -0.0
364,673 + OKGIIK_01605 0.68 -0.0
364,673 + OKGIIK_01605 0.68 +0.5
364,673 + OKGIIK_01605 0.68 +1.0
364,673 + OKGIIK_01605 0.68 +1.5
364,673 + OKGIIK_01605 0.68 +1.0
364,673 + OKGIIK_01605 0.68 +0.3
364,673 + OKGIIK_01605 0.68 -0.3
364,673 + OKGIIK_01605 0.68 +0.3
364,673 + OKGIIK_01605 0.68 +0.1
364,673 + OKGIIK_01605 0.68 +0.7
364,673 + OKGIIK_01605 0.68 -0.5
364,673 + OKGIIK_01605 0.68 -0.7
364,673 + OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 -0.5
364,674 - OKGIIK_01605 0.68 +0.4
364,674 - OKGIIK_01605 0.68 -1.2
364,674 - OKGIIK_01605 0.68 -0.9
364,674 - OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 -0.4
364,674 - OKGIIK_01605 0.68 -0.7
364,674 - OKGIIK_01605 0.68 -0.0
364,674 - OKGIIK_01605 0.68 +0.8
364,674 - OKGIIK_01605 0.68 -0.9
364,674 - OKGIIK_01605 0.68 +1.7
364,674 - OKGIIK_01605 0.68 +1.5
364,674 - OKGIIK_01605 0.68 -0.0
364,674 - OKGIIK_01605 0.68 -0.5
364,674 - OKGIIK_01605 0.68 -2.3
364,674 - OKGIIK_01605 0.68 -1.3
364,674 - OKGIIK_01605 0.68 +0.8
364,674 - OKGIIK_01605 0.68 -0.5
364,674 - OKGIIK_01605 0.68 -0.5
364,674 - OKGIIK_01605 0.68 +1.0
364,674 - OKGIIK_01605 0.68 -0.8
364,674 - OKGIIK_01605 0.68 +0.3
364,674 - OKGIIK_01605 0.68 +0.7
364,674 - OKGIIK_01605 0.68 +1.3
364,674 - OKGIIK_01605 0.68 +0.7
364,674 - OKGIIK_01605 0.68 +1.3
364,892 + OKGIIK_01605 0.85 +1.3
364,892 + OKGIIK_01605 0.85 -0.7
364,892 + OKGIIK_01605 0.85 -0.3
364,892 + OKGIIK_01605 0.85 +0.3
364,893 - OKGIIK_01605 0.85 -0.5
365,075 + -0.3
365,075 + +1.4
365,075 + +0.3
365,075 + -1.0
365,075 + +1.5
365,076 - -0.1
365,076 - -2.0
365,076 - -0.0
365,083 + +0.1
365,083 + +0.3
365,084 - +1.0
365,377 + OKGIIK_01610 0.21 -0.2
365,377 + OKGIIK_01610 0.21 +0.7
365,377 + OKGIIK_01610 0.21 -2.3
365,377 + OKGIIK_01610 0.21 -0.5
365,377 + OKGIIK_01610 0.21 +1.6
365,378 - OKGIIK_01610 0.21 -2.4
365,731 + OKGIIK_01610 0.57 -0.9
365,731 + OKGIIK_01610 0.57 +0.3
365,731 + OKGIIK_01610 0.57 +0.8
365,731 + OKGIIK_01610 0.57 +0.3
365,731 + OKGIIK_01610 0.57 +1.6
365,731 + OKGIIK_01610 0.57 +1.6
365,731 + OKGIIK_01610 0.57 +1.8
365,731 + OKGIIK_01610 0.57 +2.1
365,731 + OKGIIK_01610 0.57 +0.3
365,731 + OKGIIK_01610 0.57 -2.0
365,731 + OKGIIK_01610 0.57 +2.3
365,731 + OKGIIK_01610 0.57 -0.5
365,731 + OKGIIK_01610 0.57 -0.5
365,731 + OKGIIK_01610 0.57 +1.6
365,731 + OKGIIK_01610 0.57 +0.9
365,732 - OKGIIK_01610 0.57 -0.2
365,732 - OKGIIK_01610 0.57 +0.7
365,732 - OKGIIK_01610 0.57 +2.3
365,732 - OKGIIK_01610 0.57 +2.3
365,732 - OKGIIK_01610 0.57 -0.4
365,809 + OKGIIK_01610 0.65 -0.0
365,810 - OKGIIK_01610 0.65 +1.3
365,971 + OKGIIK_01610 0.81 +0.7
365,971 + OKGIIK_01610 0.81 -0.5
365,971 + OKGIIK_01610 0.81 +0.1
365,972 - OKGIIK_01610 0.81 -0.0
365,972 - OKGIIK_01610 0.81 -0.6
366,196 + -1.6
366,196 + +2.1
366,197 - -0.0
366,243 + -0.2
366,243 + +0.2
366,243 + +0.4
366,243 + +0.3
366,243 + -0.5
366,244 - -0.7
366,244 - -0.7
366,244 - +0.2
366,248 + -0.6
366,905 + +0.4
366,905 + +0.9
366,905 + -0.2
366,905 + +0.5
366,905 + -2.8
366,905 + +1.7
366,905 + +1.3
366,905 + -0.0
366,905 + +1.3
366,905 + +0.3
366,905 + +2.6
366,905 + +0.3

Or see this region's nucleotide sequence