Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01300 and gcvT are separated by 55 nucleotides gcvT and gcvH are separated by 91 nucleotides
OKGIIK_01300: OKGIIK_01300 - Multifunctional fusion protein, at 286,656 to 288,530
_01300
OKGIIK_01305: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 288,586 to 289,719
gcvT
OKGIIK_01310: gcvH - glycine cleavage system protein GcvH, at 289,811 to 290,206
gcvH
Position (kb) 288
289
290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 287.673 kb on + strand, within OKGIIK_01300 at 287.673 kb on + strand, within OKGIIK_01300 at 287.674 kb on - strand, within OKGIIK_01300 at 287.793 kb on + strand, within OKGIIK_01300 at 287.793 kb on + strand, within OKGIIK_01300 at 287.793 kb on + strand, within OKGIIK_01300 at 287.794 kb on - strand, within OKGIIK_01300 at 287.794 kb on - strand, within OKGIIK_01300 at 287.794 kb on - strand, within OKGIIK_01300 at 287.794 kb on - strand, within OKGIIK_01300 at 287.794 kb on - strand, within OKGIIK_01300 at 287.835 kb on + strand, within OKGIIK_01300 at 287.835 kb on + strand, within OKGIIK_01300 at 287.835 kb on + strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 287.836 kb on - strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.096 kb on + strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.097 kb on - strand, within OKGIIK_01300 at 288.249 kb on + strand, within OKGIIK_01300 at 288.360 kb on + strand at 288.360 kb on + strand at 288.414 kb on + strand at 288.415 kb on - strand at 288.415 kb on - strand at 288.415 kb on - strand at 288.415 kb on - strand at 288.584 kb on + strand at 288.584 kb on + strand at 288.584 kb on + strand at 288.584 kb on + strand at 288.584 kb on + strand at 288.584 kb on + strand at 288.585 kb on - strand at 288.635 kb on + strand at 288.706 kb on + strand, within gcvT at 288.706 kb on + strand, within gcvT at 288.706 kb on + strand, within gcvT at 288.707 kb on - strand, within gcvT at 288.707 kb on - strand, within gcvT at 288.707 kb on - strand, within gcvT at 288.871 kb on + strand, within gcvT at 288.871 kb on + strand, within gcvT at 288.871 kb on + strand, within gcvT at 288.872 kb on - strand, within gcvT at 288.872 kb on - strand, within gcvT at 288.872 kb on - strand, within gcvT at 288.922 kb on + strand, within gcvT at 288.922 kb on + strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.943 kb on + strand, within gcvT at 289.199 kb on - strand, within gcvT at 289.678 kb on + strand at 289.678 kb on + strand at 289.679 kb on - strand at 289.681 kb on - strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.777 kb on + strand at 289.777 kb on + strand at 289.777 kb on + strand at 289.777 kb on + strand at 289.777 kb on + strand at 289.934 kb on + strand, within gcvH at 289.935 kb on - strand, within gcvH at 289.935 kb on - strand, within gcvH at 289.935 kb on - strand, within gcvH at 289.935 kb on - strand, within gcvH at 290.021 kb on + strand, within gcvH at 290.021 kb on + strand, within gcvH at 290.022 kb on - strand, within gcvH at 290.022 kb on - strand, within gcvH at 290.022 kb on - strand, within gcvH at 290.022 kb on - strand, within gcvH at 290.175 kb on - strand at 290.175 kb on - strand at 290.316 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.690 kb on + strand at 290.690 kb on + strand at 290.691 kb on - strand at 290.702 kb on + strand at 290.702 kb on + strand at 290.702 kb on + strand at 290.702 kb on + strand at 290.702 kb on + strand at 290.718 kb on + strand at 290.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 287,673 + OKGIIK_01300 0.54 -3.0 287,673 + OKGIIK_01300 0.54 -1.1 287,674 - OKGIIK_01300 0.54 -1.7 287,793 + OKGIIK_01300 0.61 -1.8 287,793 + OKGIIK_01300 0.61 -0.5 287,793 + OKGIIK_01300 0.61 +0.1 287,794 - OKGIIK_01300 0.61 +0.4 287,794 - OKGIIK_01300 0.61 -0.8 287,794 - OKGIIK_01300 0.61 -1.1 287,794 - OKGIIK_01300 0.61 -0.1 287,794 - OKGIIK_01300 0.61 -2.4 287,835 + OKGIIK_01300 0.63 -0.7 287,835 + OKGIIK_01300 0.63 -1.3 287,835 + OKGIIK_01300 0.63 -0.5 287,836 - OKGIIK_01300 0.63 -1.3 287,836 - OKGIIK_01300 0.63 -0.8 287,836 - OKGIIK_01300 0.63 +0.2 287,836 - OKGIIK_01300 0.63 +0.0 287,836 - OKGIIK_01300 0.63 -0.8 287,836 - OKGIIK_01300 0.63 +0.3 287,836 - OKGIIK_01300 0.63 -0.4 287,836 - OKGIIK_01300 0.63 -1.9 287,836 - OKGIIK_01300 0.63 +0.9 287,836 - OKGIIK_01300 0.63 -0.5 288,096 + OKGIIK_01300 0.77 -0.7 288,096 + OKGIIK_01300 0.77 +0.3 288,096 + OKGIIK_01300 0.77 +0.3 288,096 + OKGIIK_01300 0.77 -1.1 288,096 + OKGIIK_01300 0.77 -1.3 288,096 + OKGIIK_01300 0.77 -0.8 288,096 + OKGIIK_01300 0.77 -0.5 288,096 + OKGIIK_01300 0.77 -1.1 288,096 + OKGIIK_01300 0.77 -0.3 288,096 + OKGIIK_01300 0.77 +0.6 288,096 + OKGIIK_01300 0.77 -1.5 288,096 + OKGIIK_01300 0.77 -0.5 288,096 + OKGIIK_01300 0.77 -1.3 288,096 + OKGIIK_01300 0.77 +1.2 288,096 + OKGIIK_01300 0.77 -1.5 288,096 + OKGIIK_01300 0.77 -1.7 288,096 + OKGIIK_01300 0.77 -1.7 288,097 - OKGIIK_01300 0.77 -1.4 288,097 - OKGIIK_01300 0.77 -1.7 288,097 - OKGIIK_01300 0.77 +0.1 288,097 - OKGIIK_01300 0.77 -1.7 288,097 - OKGIIK_01300 0.77 -0.7 288,097 - OKGIIK_01300 0.77 +0.5 288,097 - OKGIIK_01300 0.77 +2.7 288,097 - OKGIIK_01300 0.77 +1.2 288,097 - OKGIIK_01300 0.77 -2.1 288,097 - OKGIIK_01300 0.77 -0.5 288,097 - OKGIIK_01300 0.77 +1.2 288,097 - OKGIIK_01300 0.77 -2.1 288,097 - OKGIIK_01300 0.77 +0.5 288,097 - OKGIIK_01300 0.77 -2.0 288,097 - OKGIIK_01300 0.77 -1.4 288,097 - OKGIIK_01300 0.77 -0.8 288,097 - OKGIIK_01300 0.77 -1.1 288,097 - OKGIIK_01300 0.77 -1.0 288,097 - OKGIIK_01300 0.77 -1.3 288,249 + OKGIIK_01300 0.85 -0.1 288,360 + -1.0 288,360 + +1.1 288,414 + +0.2 288,415 - -1.8 288,415 - -2.8 288,415 - -0.5 288,415 - +0.3 288,584 + +1.2 288,584 + -0.5 288,584 + -0.5 288,584 + -1.3 288,584 + -1.1 288,584 + -1.3 288,585 - +0.3 288,635 + -0.9 288,706 + gcvT OKGIIK_01305 0.11 -0.8 288,706 + gcvT OKGIIK_01305 0.11 -1.1 288,706 + gcvT OKGIIK_01305 0.11 +0.8 288,707 - gcvT OKGIIK_01305 0.11 -1.3 288,707 - gcvT OKGIIK_01305 0.11 -0.8 288,707 - gcvT OKGIIK_01305 0.11 -0.5 288,871 + gcvT OKGIIK_01305 0.25 -0.5 288,871 + gcvT OKGIIK_01305 0.25 -0.5 288,871 + gcvT OKGIIK_01305 0.25 -0.5 288,872 - gcvT OKGIIK_01305 0.25 -0.5 288,872 - gcvT OKGIIK_01305 0.25 +0.9 288,872 - gcvT OKGIIK_01305 0.25 -1.1 288,922 + gcvT OKGIIK_01305 0.30 -1.1 288,922 + gcvT OKGIIK_01305 0.30 -2.9 288,923 - gcvT OKGIIK_01305 0.30 -0.5 288,923 - gcvT OKGIIK_01305 0.30 -0.5 288,923 - gcvT OKGIIK_01305 0.30 -1.8 288,923 - gcvT OKGIIK_01305 0.30 -1.1 288,923 - gcvT OKGIIK_01305 0.30 -1.9 288,943 + gcvT OKGIIK_01305 0.31 -1.3 289,199 - gcvT OKGIIK_01305 0.54 -2.9 289,678 + -0.3 289,678 + -1.3 289,679 - -1.8 289,681 - +0.2 289,762 + -2.0 289,762 + -2.4 289,762 + +1.0 289,762 + -0.1 289,762 + -1.1 289,762 + -2.4 289,762 + -0.1 289,762 + -0.5 289,762 + -1.9 289,762 + -0.6 289,762 + -0.5 289,762 + -1.3 289,762 + -1.0 289,762 + -1.4 289,762 + -1.2 289,763 - -0.3 289,763 - +0.2 289,763 - -0.5 289,763 - -1.0 289,763 - -0.5 289,777 + -0.8 289,777 + -1.1 289,777 + -0.7 289,777 + -0.1 289,777 + -1.5 289,934 + gcvH OKGIIK_01310 0.31 -0.6 289,935 - gcvH OKGIIK_01310 0.31 -0.8 289,935 - gcvH OKGIIK_01310 0.31 -1.5 289,935 - gcvH OKGIIK_01310 0.31 +0.3 289,935 - gcvH OKGIIK_01310 0.31 -0.5 290,021 + gcvH OKGIIK_01310 0.53 -2.6 290,021 + gcvH OKGIIK_01310 0.53 -1.4 290,022 - gcvH OKGIIK_01310 0.53 -1.9 290,022 - gcvH OKGIIK_01310 0.53 -1.1 290,022 - gcvH OKGIIK_01310 0.53 -1.9 290,022 - gcvH OKGIIK_01310 0.53 -0.8 290,175 - -0.1 290,175 - -2.7 290,316 + -0.1 290,385 + -2.0 290,385 + -2.9 290,385 + +1.8 290,385 + -0.1 290,385 + +0.5 290,385 + -1.0 290,385 + -0.8 290,385 + -0.5 290,385 + -1.8 290,385 + -1.1 290,385 + -2.5 290,385 + -4.1 290,385 + -0.1 290,385 + -1.3 290,385 + -1.5 290,385 + -1.5 290,385 + -1.6 290,385 + -0.5 290,385 + +1.3 290,385 + -1.2 290,385 + -2.6 290,385 + +0.8 290,385 + -1.5 290,385 + -1.8 290,385 + -2.0 290,386 - -0.2 290,386 - -1.1 290,386 - +0.7 290,386 - +0.2 290,386 - -1.3 290,386 - +0.5 290,386 - -1.5 290,386 - -1.1 290,386 - -0.5 290,386 - -0.5 290,386 - +1.1 290,386 - -1.6 290,386 - -0.6 290,386 - -1.3 290,386 - -0.8 290,386 - -1.9 290,386 - -0.8 290,386 - -0.8 290,386 - +0.5 290,690 + -0.5 290,690 + -0.1 290,691 - -0.2 290,702 + -0.3 290,702 + -1.1 290,702 + +0.5 290,702 + -1.3 290,702 + -0.8 290,718 + -1.4 290,718 + -1.8
Or see this region's nucleotide sequence