Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01195

Experiment: R2A_PIPES pH 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_01190 and OKGIIK_01195 are separated by 284 nucleotidesOKGIIK_01195 and OKGIIK_01200 overlap by 4 nucleotides OKGIIK_01190: OKGIIK_01190 - Transport permease protein, at 256,746 to 257,540 _01190 OKGIIK_01195: OKGIIK_01195 - ABC transporter, ATP-binding protein, at 257,825 to 258,763 _01195 OKGIIK_01200: OKGIIK_01200 - FkbM family methyltransferase, at 258,760 to 260,784 _01200 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1at 256.888 kb on - strand, within OKGIIK_01190at 256.888 kb on - strand, within OKGIIK_01190at 256.950 kb on + strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.960 kb on - strand, within OKGIIK_01190at 257.005 kb on + strand, within OKGIIK_01190at 257.085 kb on - strand, within OKGIIK_01190at 257.171 kb on + strand, within OKGIIK_01190at 257.171 kb on + strand, within OKGIIK_01190at 257.205 kb on - strand, within OKGIIK_01190at 257.248 kb on + strand, within OKGIIK_01190at 257.302 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.589 kb on - strandat 257.752 kb on - strandat 257.802 kb on + strandat 257.802 kb on + strandat 257.951 kb on + strand, within OKGIIK_01195at 257.975 kb on + strand, within OKGIIK_01195at 257.976 kb on - strand, within OKGIIK_01195at 258.045 kb on + strand, within OKGIIK_01195at 258.074 kb on + strand, within OKGIIK_01195at 258.075 kb on - strand, within OKGIIK_01195at 258.075 kb on - strand, within OKGIIK_01195at 258.235 kb on + strand, within OKGIIK_01195at 258.243 kb on + strand, within OKGIIK_01195at 258.243 kb on + strand, within OKGIIK_01195at 258.244 kb on - strand, within OKGIIK_01195at 258.245 kb on + strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.275 kb on - strand, within OKGIIK_01195at 258.278 kb on - strand, within OKGIIK_01195at 258.278 kb on - strand, within OKGIIK_01195at 258.278 kb on - strand, within OKGIIK_01195at 258.352 kb on + strand, within OKGIIK_01195at 258.353 kb on - strand, within OKGIIK_01195at 258.468 kb on - strand, within OKGIIK_01195at 258.468 kb on - strand, within OKGIIK_01195at 258.468 kb on - strand, within OKGIIK_01195at 258.520 kb on + strand, within OKGIIK_01195at 258.521 kb on - strand, within OKGIIK_01195at 258.543 kb on + strand, within OKGIIK_01195at 258.605 kb on + strand, within OKGIIK_01195at 258.606 kb on - strand, within OKGIIK_01195at 258.606 kb on - strand, within OKGIIK_01195at 258.606 kb on - strand, within OKGIIK_01195at 258.652 kb on + strand, within OKGIIK_01195at 258.653 kb on - strand, within OKGIIK_01195at 258.653 kb on - strand, within OKGIIK_01195at 258.657 kb on - strand, within OKGIIK_01195at 258.657 kb on - strand, within OKGIIK_01195at 258.657 kb on - strand, within OKGIIK_01195at 258.657 kb on - strand, within OKGIIK_01195at 258.657 kb on - strand, within OKGIIK_01195at 258.712 kb on - strandat 258.712 kb on - strandat 258.769 kb on - strandat 258.769 kb on - strandat 258.769 kb on - strandat 258.776 kb on - strandat 258.776 kb on - strandat 258.839 kb on - strandat 258.839 kb on - strandat 258.839 kb on - strandat 259.000 kb on - strand, within OKGIIK_01200at 259.248 kb on - strand, within OKGIIK_01200at 259.273 kb on - strand, within OKGIIK_01200at 259.273 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.289 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.291 kb on - strand, within OKGIIK_01200at 259.337 kb on - strand, within OKGIIK_01200at 259.337 kb on - strand, within OKGIIK_01200at 259.356 kb on - strand, within OKGIIK_01200at 259.361 kb on - strand, within OKGIIK_01200at 259.365 kb on - strand, within OKGIIK_01200at 259.365 kb on - strand, within OKGIIK_01200at 259.542 kb on - strand, within OKGIIK_01200at 259.542 kb on - strand, within OKGIIK_01200at 259.542 kb on - strand, within OKGIIK_01200at 259.559 kb on - strand, within OKGIIK_01200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
remove
256,888 - OKGIIK_01190 0.18 -0.7
256,888 - OKGIIK_01190 0.18 +0.5
256,950 + OKGIIK_01190 0.26 -0.5
256,951 - OKGIIK_01190 0.26 -0.8
256,951 - OKGIIK_01190 0.26 -0.5
256,951 - OKGIIK_01190 0.26 -0.8
256,960 - OKGIIK_01190 0.27 -0.8
257,005 + OKGIIK_01190 0.33 -1.1
257,085 - OKGIIK_01190 0.43 -1.7
257,171 + OKGIIK_01190 0.53 -0.5
257,171 + OKGIIK_01190 0.53 -0.5
257,205 - OKGIIK_01190 0.58 -1.1
257,248 + OKGIIK_01190 0.63 -2.3
257,302 + OKGIIK_01190 0.70 -1.3
257,328 + OKGIIK_01190 0.73 -1.1
257,328 + OKGIIK_01190 0.73 -2.7
257,329 - OKGIIK_01190 0.73 -2.0
257,329 - OKGIIK_01190 0.73 -0.8
257,329 - OKGIIK_01190 0.73 -1.1
257,589 - -2.0
257,752 - +1.2
257,802 + -0.8
257,802 + -0.8
257,951 + OKGIIK_01195 0.13 -2.2
257,975 + OKGIIK_01195 0.16 -0.6
257,976 - OKGIIK_01195 0.16 -1.7
258,045 + OKGIIK_01195 0.23 -0.8
258,074 + OKGIIK_01195 0.27 +0.5
258,075 - OKGIIK_01195 0.27 -1.1
258,075 - OKGIIK_01195 0.27 -1.7
258,235 + OKGIIK_01195 0.44 -2.1
258,243 + OKGIIK_01195 0.45 -2.1
258,243 + OKGIIK_01195 0.45 -0.5
258,244 - OKGIIK_01195 0.45 -0.2
258,245 + OKGIIK_01195 0.45 -0.5
258,246 - OKGIIK_01195 0.45 +0.1
258,246 - OKGIIK_01195 0.45 -0.8
258,246 - OKGIIK_01195 0.45 -1.7
258,246 - OKGIIK_01195 0.45 -1.1
258,275 - OKGIIK_01195 0.48 -2.2
258,278 - OKGIIK_01195 0.48 -1.1
258,278 - OKGIIK_01195 0.48 -0.5
258,278 - OKGIIK_01195 0.48 +0.5
258,352 + OKGIIK_01195 0.56 -0.8
258,353 - OKGIIK_01195 0.56 -0.8
258,468 - OKGIIK_01195 0.68 -0.1
258,468 - OKGIIK_01195 0.68 +0.2
258,468 - OKGIIK_01195 0.68 -2.3
258,520 + OKGIIK_01195 0.74 -2.0
258,521 - OKGIIK_01195 0.74 -1.7
258,543 + OKGIIK_01195 0.76 -0.8
258,605 + OKGIIK_01195 0.83 -1.3
258,606 - OKGIIK_01195 0.83 -0.2
258,606 - OKGIIK_01195 0.83 -1.5
258,606 - OKGIIK_01195 0.83 -2.4
258,652 + OKGIIK_01195 0.88 -0.8
258,653 - OKGIIK_01195 0.88 +0.5
258,653 - OKGIIK_01195 0.88 +1.0
258,657 - OKGIIK_01195 0.89 -1.7
258,657 - OKGIIK_01195 0.89 -0.5
258,657 - OKGIIK_01195 0.89 -1.1
258,657 - OKGIIK_01195 0.89 -2.7
258,657 - OKGIIK_01195 0.89 +0.1
258,712 - -1.8
258,712 - -1.0
258,769 - -2.6
258,769 - -1.8
258,769 - -1.8
258,776 - -1.1
258,776 - -2.2
258,839 - -1.3
258,839 - -1.8
258,839 - -3.2
259,000 - OKGIIK_01200 0.12 -1.3
259,248 - OKGIIK_01200 0.24 -1.1
259,273 - OKGIIK_01200 0.25 -2.1
259,273 - OKGIIK_01200 0.25 -3.0
259,289 - OKGIIK_01200 0.26 -2.0
259,289 - OKGIIK_01200 0.26 -0.5
259,289 - OKGIIK_01200 0.26 +0.5
259,289 - OKGIIK_01200 0.26 -0.5
259,289 - OKGIIK_01200 0.26 -0.5
259,289 - OKGIIK_01200 0.26 +0.7
259,289 - OKGIIK_01200 0.26 -1.6
259,289 - OKGIIK_01200 0.26 -2.2
259,289 - OKGIIK_01200 0.26 -0.8
259,289 - OKGIIK_01200 0.26 -2.8
259,289 - OKGIIK_01200 0.26 -0.8
259,289 - OKGIIK_01200 0.26 -2.4
259,289 - OKGIIK_01200 0.26 -1.1
259,291 - OKGIIK_01200 0.26 +0.2
259,291 - OKGIIK_01200 0.26 -0.5
259,291 - OKGIIK_01200 0.26 -0.5
259,291 - OKGIIK_01200 0.26 -2.0
259,291 - OKGIIK_01200 0.26 -0.8
259,291 - OKGIIK_01200 0.26 -1.1
259,291 - OKGIIK_01200 0.26 -0.5
259,337 - OKGIIK_01200 0.28 -2.1
259,337 - OKGIIK_01200 0.28 -1.3
259,356 - OKGIIK_01200 0.29 -2.7
259,361 - OKGIIK_01200 0.30 -2.4
259,365 - OKGIIK_01200 0.30 +0.1
259,365 - OKGIIK_01200 0.30 -0.8
259,542 - OKGIIK_01200 0.39 -2.0
259,542 - OKGIIK_01200 0.39 -1.3
259,542 - OKGIIK_01200 0.39 -0.8
259,559 - OKGIIK_01200 0.39 -3.1

Or see this region's nucleotide sequence