Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00995

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00990 and OKGIIK_00995 are separated by 66 nucleotidesOKGIIK_00995 and OKGIIK_01000 overlap by 17 nucleotidesOKGIIK_01000 and OKGIIK_01005 overlap by 4 nucleotides OKGIIK_00990: OKGIIK_00990 - TonB-dependent copper receptor, at 215,955 to 218,099 _00990 OKGIIK_00995: OKGIIK_00995 - DUF2946 domain-containing protein, at 218,166 to 218,573 _00995 OKGIIK_01000: OKGIIK_01000 - hypothetical protein, at 218,557 to 218,829 _01000 OKGIIK_01005: OKGIIK_01005 - Prephenate dehydrogenase, at 218,826 to 219,590 _01005 Position (kb) 218 219Strain fitness (log2 ratio) -1 0 1 2at 217.385 kb on - strand, within OKGIIK_00990at 217.651 kb on + strand, within OKGIIK_00990at 218.216 kb on - strand, within OKGIIK_00995at 218.216 kb on - strand, within OKGIIK_00995at 218.216 kb on - strand, within OKGIIK_00995at 218.275 kb on - strand, within OKGIIK_00995at 218.336 kb on - strand, within OKGIIK_00995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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217,385 - OKGIIK_00990 0.67 +0.1
217,651 + OKGIIK_00990 0.79 -0.1
218,216 - OKGIIK_00995 0.12 +2.5
218,216 - OKGIIK_00995 0.12 -0.4
218,216 - OKGIIK_00995 0.12 +1.2
218,275 - OKGIIK_00995 0.27 +1.3
218,336 - OKGIIK_00995 0.42 -1.2

Or see this region's nucleotide sequence