Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00965

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00950 and OKGIIK_00955 are separated by 9 nucleotidesOKGIIK_00955 and OKGIIK_00960 are separated by 156 nucleotidesOKGIIK_00960 and OKGIIK_00965 are separated by 28 nucleotidesOKGIIK_00965 and OKGIIK_00970 are separated by 92 nucleotides OKGIIK_00950: OKGIIK_00950 - Hemolysin D, at 207,667 to 208,326 _00950 OKGIIK_00955: OKGIIK_00955 - Transcriptional regulator, at 208,336 to 208,722 _00955 OKGIIK_00960: OKGIIK_00960 - Sulfurtransferase, at 208,879 to 209,085 _00960 OKGIIK_00965: OKGIIK_00965 - DUF302 domain-containing protein, at 209,114 to 209,539 _00965 OKGIIK_00970: OKGIIK_00970 - Pyridine nucleotide-disulfide oxidoreductase, at 209,632 to 210,921 _00970 Position (kb) 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 208.201 kb on + strand, within OKGIIK_00950at 208.201 kb on + strand, within OKGIIK_00950at 208.201 kb on + strand, within OKGIIK_00950at 208.201 kb on + strand, within OKGIIK_00950at 208.201 kb on + strand, within OKGIIK_00950at 208.202 kb on - strand, within OKGIIK_00950at 208.202 kb on - strand, within OKGIIK_00950at 208.247 kb on - strand, within OKGIIK_00950at 208.247 kb on - strand, within OKGIIK_00950at 208.247 kb on - strand, within OKGIIK_00950at 208.297 kb on + strandat 208.298 kb on - strandat 208.298 kb on - strandat 208.298 kb on - strandat 208.298 kb on - strandat 208.329 kb on - strandat 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.418 kb on + strand, within OKGIIK_00955at 208.419 kb on - strand, within OKGIIK_00955at 208.427 kb on + strand, within OKGIIK_00955at 208.470 kb on + strand, within OKGIIK_00955at 208.470 kb on + strand, within OKGIIK_00955at 208.470 kb on + strand, within OKGIIK_00955at 208.471 kb on - strand, within OKGIIK_00955at 208.472 kb on + strand, within OKGIIK_00955at 208.472 kb on + strand, within OKGIIK_00955at 208.472 kb on + strand, within OKGIIK_00955at 208.472 kb on + strand, within OKGIIK_00955at 208.472 kb on + strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.473 kb on - strand, within OKGIIK_00955at 208.768 kb on - strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.117 kb on + strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.118 kb on - strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.120 kb on + strandat 209.121 kb on - strandat 209.121 kb on - strandat 209.121 kb on - strandat 209.121 kb on - strandat 209.121 kb on - strandat 209.121 kb on - strandat 209.357 kb on + strand, within OKGIIK_00965at 209.357 kb on + strand, within OKGIIK_00965at 209.357 kb on + strand, within OKGIIK_00965at 209.358 kb on - strand, within OKGIIK_00965at 209.358 kb on - strand, within OKGIIK_00965at 209.358 kb on - strand, within OKGIIK_00965at 209.683 kb on + strandat 209.923 kb on + strand, within OKGIIK_00970at 209.924 kb on - strand, within OKGIIK_00970at 209.929 kb on + strand, within OKGIIK_00970at 209.929 kb on + strand, within OKGIIK_00970at 209.930 kb on - strand, within OKGIIK_00970at 210.001 kb on - strand, within OKGIIK_00970at 210.049 kb on + strand, within OKGIIK_00970at 210.049 kb on + strand, within OKGIIK_00970at 210.050 kb on - strand, within OKGIIK_00970at 210.050 kb on - strand, within OKGIIK_00970at 210.050 kb on - strand, within OKGIIK_00970at 210.124 kb on + strand, within OKGIIK_00970at 210.125 kb on - strand, within OKGIIK_00970at 210.125 kb on - strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.211 kb on + strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.212 kb on - strand, within OKGIIK_00970at 210.213 kb on + strand, within OKGIIK_00970

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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208,201 + OKGIIK_00950 0.81 -1.2
208,201 + OKGIIK_00950 0.81 -1.3
208,201 + OKGIIK_00950 0.81 +1.5
208,201 + OKGIIK_00950 0.81 +0.1
208,201 + OKGIIK_00950 0.81 -0.2
208,202 - OKGIIK_00950 0.81 -0.6
208,202 - OKGIIK_00950 0.81 +0.4
208,247 - OKGIIK_00950 0.88 +0.2
208,247 - OKGIIK_00950 0.88 -0.4
208,247 - OKGIIK_00950 0.88 -1.2
208,297 + +1.1
208,298 - -0.1
208,298 - -0.5
208,298 - -0.8
208,298 - -1.4
208,329 - -0.5
208,418 + OKGIIK_00955 0.21 +0.6
208,418 + OKGIIK_00955 0.21 +0.9
208,418 + OKGIIK_00955 0.21 +1.0
208,418 + OKGIIK_00955 0.21 +1.5
208,418 + OKGIIK_00955 0.21 +1.5
208,418 + OKGIIK_00955 0.21 +1.0
208,418 + OKGIIK_00955 0.21 -0.5
208,418 + OKGIIK_00955 0.21 +0.2
208,419 - OKGIIK_00955 0.21 +0.5
208,427 + OKGIIK_00955 0.24 +0.8
208,470 + OKGIIK_00955 0.35 -1.1
208,470 + OKGIIK_00955 0.35 -0.5
208,470 + OKGIIK_00955 0.35 +1.1
208,471 - OKGIIK_00955 0.35 -0.4
208,472 + OKGIIK_00955 0.35 +1.8
208,472 + OKGIIK_00955 0.35 +0.2
208,472 + OKGIIK_00955 0.35 +1.4
208,472 + OKGIIK_00955 0.35 +1.3
208,472 + OKGIIK_00955 0.35 +1.0
208,473 - OKGIIK_00955 0.35 +0.8
208,473 - OKGIIK_00955 0.35 -2.2
208,473 - OKGIIK_00955 0.35 +0.1
208,473 - OKGIIK_00955 0.35 -0.1
208,473 - OKGIIK_00955 0.35 +1.8
208,473 - OKGIIK_00955 0.35 +0.5
208,473 - OKGIIK_00955 0.35 +0.7
208,768 - +0.9
209,117 + +0.6
209,117 + +0.2
209,117 + +2.2
209,117 + -0.2
209,117 + -0.6
209,117 + -0.8
209,117 + -0.8
209,117 + +1.4
209,117 + -0.6
209,117 + -0.1
209,117 + -0.1
209,117 + +0.4
209,117 + +0.0
209,117 + -1.5
209,117 + -0.6
209,118 - +0.9
209,118 - +0.6
209,118 - -0.1
209,118 - +1.0
209,118 - -1.6
209,118 - -0.4
209,118 - +1.2
209,118 - +1.2
209,118 - +1.2
209,118 - +0.1
209,118 - +0.1
209,118 - +1.7
209,118 - +0.9
209,118 - -2.3
209,118 - -0.7
209,118 - -0.8
209,118 - +0.2
209,120 + +2.2
209,120 + +1.5
209,120 + +0.4
209,120 + +1.3
209,120 + -0.6
209,120 + -1.2
209,120 + +1.0
209,120 + -0.8
209,120 + +0.8
209,120 + +0.8
209,120 + -0.1
209,120 + -0.2
209,120 + -0.6
209,120 + -1.1
209,120 + +0.2
209,120 + +0.4
209,120 + +0.5
209,120 + -0.4
209,121 - -0.1
209,121 - -1.6
209,121 - -0.9
209,121 - +0.2
209,121 - -0.1
209,121 - -1.4
209,357 + OKGIIK_00965 0.57 +0.2
209,357 + OKGIIK_00965 0.57 +1.2
209,357 + OKGIIK_00965 0.57 +1.4
209,358 - OKGIIK_00965 0.57 +0.1
209,358 - OKGIIK_00965 0.57 -0.6
209,358 - OKGIIK_00965 0.57 -0.6
209,683 + -1.1
209,923 + OKGIIK_00970 0.23 -0.3
209,924 - OKGIIK_00970 0.23 +0.8
209,929 + OKGIIK_00970 0.23 +0.8
209,929 + OKGIIK_00970 0.23 +0.2
209,930 - OKGIIK_00970 0.23 +0.6
210,001 - OKGIIK_00970 0.29 +2.2
210,049 + OKGIIK_00970 0.32 -0.7
210,049 + OKGIIK_00970 0.32 -0.6
210,050 - OKGIIK_00970 0.32 +0.1
210,050 - OKGIIK_00970 0.32 -1.4
210,050 - OKGIIK_00970 0.32 +0.1
210,124 + OKGIIK_00970 0.38 -0.5
210,125 - OKGIIK_00970 0.38 +0.9
210,125 - OKGIIK_00970 0.38 -0.1
210,211 + OKGIIK_00970 0.45 +0.6
210,211 + OKGIIK_00970 0.45 +0.8
210,211 + OKGIIK_00970 0.45 -0.4
210,211 + OKGIIK_00970 0.45 -1.2
210,211 + OKGIIK_00970 0.45 +0.2
210,211 + OKGIIK_00970 0.45 -1.5
210,211 + OKGIIK_00970 0.45 +0.2
210,211 + OKGIIK_00970 0.45 -0.9
210,212 - OKGIIK_00970 0.45 -0.8
210,212 - OKGIIK_00970 0.45 +1.4
210,212 - OKGIIK_00970 0.45 -0.3
210,212 - OKGIIK_00970 0.45 -0.9
210,212 - OKGIIK_00970 0.45 -0.2
210,212 - OKGIIK_00970 0.45 -0.1
210,212 - OKGIIK_00970 0.45 +1.0
210,212 - OKGIIK_00970 0.45 -0.4
210,212 - OKGIIK_00970 0.45 -0.8
210,212 - OKGIIK_00970 0.45 -1.4
210,212 - OKGIIK_00970 0.45 +0.2
210,213 + OKGIIK_00970 0.45 -0.9

Or see this region's nucleotide sequence