Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00715 and ygjP are separated by 59 nucleotides ygjP and OKGIIK_00725 are separated by 2 nucleotides OKGIIK_00725 and OKGIIK_00730 are separated by 583 nucleotides
OKGIIK_00715: OKGIIK_00715 - glyoxalase, at 157,189 to 157,572
_00715
OKGIIK_00720: ygjP - metal-dependent hydrolase, at 157,632 to 158,150
ygjP
OKGIIK_00725: OKGIIK_00725 - DUF6348 domain-containing protein, at 158,153 to 158,797
_00725
OKGIIK_00730: OKGIIK_00730 - Peptide transporter, at 159,381 to 161,048
_00730
Position (kb) 158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.442 kb on + strand, within OKGIIK_00715 at 157.442 kb on + strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.597 kb on + strand at 157.597 kb on + strand at 157.598 kb on - strand at 157.617 kb on - strand at 157.624 kb on + strand at 157.625 kb on - strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.648 kb on - strand at 157.659 kb on + strand at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.774 kb on - strand, within ygjP at 157.774 kb on - strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.098 kb on - strand, within ygjP at 158.098 kb on - strand, within ygjP at 158.177 kb on + strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.451 kb on - strand, within OKGIIK_00725 at 158.753 kb on + strand at 158.753 kb on + strand at 158.753 kb on + strand at 158.754 kb on - strand at 158.754 kb on - strand at 158.985 kb on - strand at 158.985 kb on - strand at 159.013 kb on + strand at 159.014 kb on - strand at 159.014 kb on - strand at 159.014 kb on - strand at 159.014 kb on - strand at 159.036 kb on + strand at 159.119 kb on + strand at 159.222 kb on + strand at 159.222 kb on + strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.317 kb on + strand at 159.318 kb on - strand at 159.318 kb on - strand at 159.318 kb on - strand at 159.346 kb on + strand at 159.346 kb on + strand at 159.346 kb on + strand at 159.346 kb on + strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.347 kb on - strand at 159.348 kb on + strand at 159.348 kb on + strand at 159.348 kb on + strand at 159.348 kb on + strand at 159.348 kb on + strand at 159.349 kb on - strand at 159.349 kb on - strand at 159.349 kb on - strand at 159.352 kb on + strand at 159.352 kb on + strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.353 kb on - strand at 159.398 kb on - strand at 159.409 kb on + strand at 159.410 kb on - strand at 159.674 kb on + strand, within OKGIIK_00730 at 159.674 kb on + strand, within OKGIIK_00730 at 159.674 kb on + strand, within OKGIIK_00730 at 159.708 kb on + strand, within OKGIIK_00730 at 159.709 kb on - strand, within OKGIIK_00730 at 159.709 kb on - strand, within OKGIIK_00730 at 159.723 kb on + strand, within OKGIIK_00730 at 159.723 kb on + strand, within OKGIIK_00730 at 159.723 kb on + strand, within OKGIIK_00730 at 159.724 kb on - strand, within OKGIIK_00730 at 159.741 kb on + strand, within OKGIIK_00730 at 159.741 kb on + strand, within OKGIIK_00730 at 159.742 kb on - strand, within OKGIIK_00730
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 157,442 + OKGIIK_00715 0.66 -0.1 157,442 + OKGIIK_00715 0.66 -0.5 157,443 - OKGIIK_00715 0.66 +0.1 157,443 - OKGIIK_00715 0.66 -0.6 157,443 - OKGIIK_00715 0.66 -0.1 157,597 + -0.6 157,597 + -0.2 157,598 - +1.5 157,617 - -0.8 157,624 + -1.9 157,625 - -0.1 157,647 + +1.0 157,647 + -0.4 157,647 + +1.6 157,647 + -0.1 157,648 - -0.7 157,659 + +0.4 157,773 + ygjP OKGIIK_00720 0.27 -0.4 157,773 + ygjP OKGIIK_00720 0.27 -1.5 157,773 + ygjP OKGIIK_00720 0.27 -1.2 157,774 - ygjP OKGIIK_00720 0.27 +2.2 157,774 - ygjP OKGIIK_00720 0.27 -0.1 157,779 + ygjP OKGIIK_00720 0.28 +1.9 157,779 + ygjP OKGIIK_00720 0.28 -0.9 157,779 + ygjP OKGIIK_00720 0.28 -1.1 157,780 - ygjP OKGIIK_00720 0.29 +0.8 157,780 - ygjP OKGIIK_00720 0.29 -0.6 157,839 + ygjP OKGIIK_00720 0.40 -1.9 157,839 + ygjP OKGIIK_00720 0.40 +0.1 157,839 + ygjP OKGIIK_00720 0.40 +0.5 157,840 - ygjP OKGIIK_00720 0.40 -1.4 157,840 - ygjP OKGIIK_00720 0.40 -0.4 157,840 - ygjP OKGIIK_00720 0.40 -0.8 157,840 - ygjP OKGIIK_00720 0.40 +0.2 158,037 + ygjP OKGIIK_00720 0.78 +1.1 158,037 + ygjP OKGIIK_00720 0.78 -0.8 158,037 + ygjP OKGIIK_00720 0.78 -0.9 158,037 + ygjP OKGIIK_00720 0.78 +0.4 158,037 + ygjP OKGIIK_00720 0.78 -1.5 158,052 + ygjP OKGIIK_00720 0.81 +1.0 158,052 + ygjP OKGIIK_00720 0.81 +0.6 158,052 + ygjP OKGIIK_00720 0.81 +0.2 158,052 + ygjP OKGIIK_00720 0.81 -1.7 158,052 + ygjP OKGIIK_00720 0.81 +2.5 158,052 + ygjP OKGIIK_00720 0.81 -0.5 158,052 + ygjP OKGIIK_00720 0.81 -0.1 158,052 + ygjP OKGIIK_00720 0.81 -0.1 158,053 - ygjP OKGIIK_00720 0.81 -0.4 158,053 - ygjP OKGIIK_00720 0.81 -1.6 158,053 - ygjP OKGIIK_00720 0.81 +0.0 158,053 - ygjP OKGIIK_00720 0.81 -0.6 158,053 - ygjP OKGIIK_00720 0.81 -0.0 158,097 + ygjP OKGIIK_00720 0.90 +0.1 158,097 + ygjP OKGIIK_00720 0.90 +0.4 158,098 - ygjP OKGIIK_00720 0.90 +0.6 158,098 - ygjP OKGIIK_00720 0.90 -0.4 158,177 + +0.3 158,178 - +0.2 158,178 - -0.1 158,178 - -0.8 158,178 - +0.1 158,178 - +2.2 158,450 + OKGIIK_00725 0.46 +0.9 158,450 + OKGIIK_00725 0.46 -0.4 158,450 + OKGIIK_00725 0.46 +0.5 158,450 + OKGIIK_00725 0.46 +0.9 158,450 + OKGIIK_00725 0.46 -0.6 158,450 + OKGIIK_00725 0.46 +3.0 158,451 - OKGIIK_00725 0.46 +0.1 158,753 + -0.9 158,753 + +0.2 158,753 + -1.2 158,754 - +0.6 158,754 - -0.8 158,985 - -0.9 158,985 - +1.5 159,013 + +0.2 159,014 - -0.2 159,014 - -0.9 159,014 - +0.1 159,014 - -1.8 159,036 + +0.5 159,119 + +0.6 159,222 + -0.9 159,222 + +1.5 159,223 - -1.2 159,223 - -0.1 159,223 - +3.2 159,223 - -0.9 159,223 - -0.8 159,223 - -1.2 159,223 - -0.2 159,317 + -2.3 159,318 - +0.1 159,318 - +0.2 159,318 - -0.9 159,346 + -0.6 159,346 + +1.2 159,346 + -0.4 159,346 + +0.4 159,347 - -1.4 159,347 - -2.0 159,347 - -1.8 159,347 - -0.8 159,347 - -2.4 159,347 - -2.3 159,347 - -0.4 159,348 + -0.7 159,348 + +0.3 159,348 + -0.5 159,348 + -0.6 159,348 + -0.5 159,349 - +0.4 159,349 - -0.4 159,349 - -1.8 159,352 + +0.8 159,352 + +0.0 159,353 - -0.8 159,353 - +1.6 159,353 - -0.4 159,353 - +0.6 159,353 - +0.2 159,353 - -1.1 159,353 - +0.2 159,353 - -0.9 159,398 - +0.1 159,409 + -0.1 159,410 - -0.4 159,674 + OKGIIK_00730 0.18 -0.1 159,674 + OKGIIK_00730 0.18 +1.8 159,674 + OKGIIK_00730 0.18 -0.1 159,708 + OKGIIK_00730 0.20 -0.2 159,709 - OKGIIK_00730 0.20 -0.1 159,709 - OKGIIK_00730 0.20 +0.1 159,723 + OKGIIK_00730 0.21 -2.3 159,723 + OKGIIK_00730 0.21 -0.7 159,723 + OKGIIK_00730 0.21 -0.5 159,724 - OKGIIK_00730 0.21 +0.3 159,741 + OKGIIK_00730 0.22 +0.2 159,741 + OKGIIK_00730 0.22 +0.2 159,742 - OKGIIK_00730 0.22 -0.8
Or see this region's nucleotide sequence