Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00655 and OKGIIK_00660 overlap by 4 nucleotides OKGIIK_00660 and OKGIIK_00665 are separated by 31 nucleotides OKGIIK_00665 and Thr_trna are separated by 60 nucleotides Thr_trna and OKGIIK_00675 are separated by 149 nucleotides OKGIIK_00675 and OKGIIK_00680 are separated by 136 nucleotides
OKGIIK_00655: OKGIIK_00655 - Bifunctional ligase/repressor BirA, at 147,337 to 148,314
_00655
OKGIIK_00660: OKGIIK_00660 - Type III pantothenate kinase, at 148,311 to 149,069
_00660
OKGIIK_00665: OKGIIK_00665 - SPOR domain-containing protein, at 149,101 to 149,769
_00665
OKGIIK_00670: Thr_trna - tRNA-Thr, at 149,830 to 149,905
_trna
OKGIIK_00675: OKGIIK_00675 - hypothetical protein, at 150,055 to 150,306
_00675
OKGIIK_00680: OKGIIK_00680 - hypothetical protein, at 150,443 to 150,718
_00680
Position (kb) 149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 149.067 kb on + strand at 149.067 kb on + strand at 149.067 kb on + strand at 149.067 kb on + strand at 149.067 kb on + strand at 149.067 kb on + strand at 149.068 kb on - strand at 149.068 kb on - strand at 149.068 kb on - strand at 149.068 kb on - strand at 149.068 kb on - strand at 149.068 kb on - strand at 149.142 kb on + strand at 149.179 kb on + strand, within OKGIIK_00665 at 149.179 kb on + strand, within OKGIIK_00665 at 149.179 kb on + strand, within OKGIIK_00665 at 149.179 kb on + strand, within OKGIIK_00665 at 149.179 kb on + strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.180 kb on - strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.317 kb on + strand, within OKGIIK_00665 at 149.318 kb on - strand, within OKGIIK_00665 at 149.318 kb on - strand, within OKGIIK_00665 at 149.318 kb on - strand, within OKGIIK_00665 at 149.318 kb on - strand, within OKGIIK_00665 at 149.449 kb on + strand, within OKGIIK_00665 at 149.449 kb on + strand, within OKGIIK_00665 at 149.450 kb on - strand, within OKGIIK_00665 at 149.450 kb on - strand, within OKGIIK_00665 at 149.450 kb on - strand, within OKGIIK_00665 at 149.450 kb on - strand, within OKGIIK_00665 at 149.450 kb on - strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.524 kb on + strand, within OKGIIK_00665 at 149.525 kb on - strand, within OKGIIK_00665 at 149.525 kb on - strand, within OKGIIK_00665 at 149.525 kb on - strand, within OKGIIK_00665 at 149.672 kb on - strand, within OKGIIK_00665 at 149.672 kb on - strand, within OKGIIK_00665 at 149.814 kb on - strand at 149.814 kb on - strand at 149.814 kb on - strand at 149.814 kb on - strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.067 kb on + strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.068 kb on - strand at 150.196 kb on + strand, within OKGIIK_00675 at 150.196 kb on + strand, within OKGIIK_00675 at 150.196 kb on + strand, within OKGIIK_00675 at 150.196 kb on + strand, within OKGIIK_00675 at 150.196 kb on + strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.197 kb on - strand, within OKGIIK_00675 at 150.230 kb on - strand, within OKGIIK_00675 at 150.230 kb on - strand, within OKGIIK_00675 at 150.256 kb on + strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.304 kb on + strand at 150.305 kb on - strand at 150.308 kb on + strand at 150.308 kb on + strand at 150.308 kb on + strand at 150.309 kb on - strand at 150.309 kb on - strand at 150.309 kb on - strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.681 kb on - strand, within OKGIIK_00680 at 150.681 kb on - strand, within OKGIIK_00680
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 149,067 + -1.6 149,067 + -1.1 149,067 + +0.9 149,067 + +0.9 149,067 + +1.0 149,067 + -0.1 149,068 - -0.3 149,068 - -0.6 149,068 - +1.1 149,068 - +0.5 149,068 - +1.9 149,068 - +0.2 149,142 + -0.1 149,179 + OKGIIK_00665 0.12 +0.9 149,179 + OKGIIK_00665 0.12 -1.1 149,179 + OKGIIK_00665 0.12 -1.1 149,179 + OKGIIK_00665 0.12 -0.6 149,179 + OKGIIK_00665 0.12 -1.2 149,180 - OKGIIK_00665 0.12 +0.3 149,180 - OKGIIK_00665 0.12 +1.9 149,180 - OKGIIK_00665 0.12 +0.8 149,180 - OKGIIK_00665 0.12 -1.5 149,180 - OKGIIK_00665 0.12 -0.1 149,180 - OKGIIK_00665 0.12 +0.2 149,180 - OKGIIK_00665 0.12 -0.9 149,180 - OKGIIK_00665 0.12 +0.2 149,317 + OKGIIK_00665 0.32 +0.9 149,317 + OKGIIK_00665 0.32 +0.0 149,317 + OKGIIK_00665 0.32 +0.6 149,317 + OKGIIK_00665 0.32 +0.2 149,317 + OKGIIK_00665 0.32 -0.8 149,317 + OKGIIK_00665 0.32 -0.1 149,317 + OKGIIK_00665 0.32 -1.1 149,317 + OKGIIK_00665 0.32 +0.2 149,317 + OKGIIK_00665 0.32 +8.1 149,317 + OKGIIK_00665 0.32 -1.8 149,317 + OKGIIK_00665 0.32 -0.0 149,317 + OKGIIK_00665 0.32 -0.5 149,317 + OKGIIK_00665 0.32 -1.2 149,317 + OKGIIK_00665 0.32 +2.2 149,317 + OKGIIK_00665 0.32 +0.4 149,317 + OKGIIK_00665 0.32 -1.4 149,317 + OKGIIK_00665 0.32 -1.6 149,318 - OKGIIK_00665 0.32 +0.3 149,318 - OKGIIK_00665 0.32 -0.6 149,318 - OKGIIK_00665 0.32 +0.1 149,318 - OKGIIK_00665 0.32 +0.7 149,449 + OKGIIK_00665 0.52 +0.2 149,449 + OKGIIK_00665 0.52 -0.1 149,450 - OKGIIK_00665 0.52 +0.2 149,450 - OKGIIK_00665 0.52 -1.4 149,450 - OKGIIK_00665 0.52 +0.6 149,450 - OKGIIK_00665 0.52 -0.6 149,450 - OKGIIK_00665 0.52 -0.1 149,524 + OKGIIK_00665 0.63 -1.1 149,524 + OKGIIK_00665 0.63 +1.2 149,524 + OKGIIK_00665 0.63 +1.0 149,524 + OKGIIK_00665 0.63 +0.2 149,524 + OKGIIK_00665 0.63 -1.5 149,524 + OKGIIK_00665 0.63 +1.5 149,525 - OKGIIK_00665 0.63 -0.3 149,525 - OKGIIK_00665 0.63 +0.4 149,525 - OKGIIK_00665 0.63 -0.4 149,672 - OKGIIK_00665 0.85 -0.2 149,672 - OKGIIK_00665 0.85 +0.1 149,814 - +0.4 149,814 - -0.5 149,814 - -0.9 149,814 - +0.9 150,067 + -0.1 150,067 + -1.6 150,067 + +1.9 150,067 + -0.4 150,067 + +0.9 150,067 + -1.4 150,067 + -0.5 150,067 + -0.3 150,067 + -0.6 150,067 + +0.6 150,067 + -0.3 150,068 - +1.5 150,068 - -1.1 150,068 - +0.2 150,068 - +1.2 150,068 - -0.8 150,068 - +1.4 150,068 - -0.8 150,196 + OKGIIK_00675 0.56 +3.2 150,196 + OKGIIK_00675 0.56 +0.2 150,196 + OKGIIK_00675 0.56 -1.2 150,196 + OKGIIK_00675 0.56 -0.6 150,196 + OKGIIK_00675 0.56 +0.2 150,197 - OKGIIK_00675 0.56 -0.7 150,197 - OKGIIK_00675 0.56 +0.2 150,197 - OKGIIK_00675 0.56 +0.1 150,197 - OKGIIK_00675 0.56 -0.8 150,197 - OKGIIK_00675 0.56 -1.6 150,197 - OKGIIK_00675 0.56 +0.2 150,197 - OKGIIK_00675 0.56 +0.2 150,197 - OKGIIK_00675 0.56 -1.4 150,230 - OKGIIK_00675 0.69 +0.4 150,230 - OKGIIK_00675 0.69 -0.2 150,256 + OKGIIK_00675 0.80 -0.8 150,257 - OKGIIK_00675 0.80 -2.8 150,257 - OKGIIK_00675 0.80 -0.6 150,257 - OKGIIK_00675 0.80 +0.6 150,257 - OKGIIK_00675 0.80 -1.2 150,257 - OKGIIK_00675 0.80 -1.2 150,257 - OKGIIK_00675 0.80 -1.8 150,304 + -0.4 150,305 - -0.8 150,308 + -0.4 150,308 + -0.1 150,308 + +1.6 150,309 - +0.2 150,309 - +0.2 150,309 - -0.4 150,350 + -0.1 150,350 + -0.1 150,350 + -1.2 150,350 + +0.2 150,350 + +0.1 150,350 + +0.2 150,350 + -0.4 150,350 + +1.1 150,350 + +0.6 150,350 + +1.2 150,351 - -1.7 150,351 - -0.9 150,351 - +0.6 150,351 - -0.9 150,351 - +0.2 150,351 - -0.7 150,351 - -0.1 150,351 - -0.1 150,351 - -0.1 150,351 - +0.6 150,351 - -0.2 150,366 + +0.3 150,366 + -1.1 150,366 + -0.9 150,366 + -0.1 150,366 + -0.6 150,366 + +0.4 150,366 + -1.1 150,366 + -0.1 150,366 + -0.2 150,366 + +0.3 150,366 + -0.8 150,366 + +0.1 150,366 + -0.0 150,366 + -0.4 150,367 - -1.5 150,367 - +0.6 150,367 - -0.1 150,367 - -1.6 150,367 - -0.4 150,367 - +0.1 150,367 - -0.2 150,367 - -0.6 150,367 - -0.4 150,367 - -0.1 150,367 - -0.6 150,408 + -0.4 150,408 + -1.2 150,408 + +0.6 150,408 + -2.1 150,408 + -0.1 150,408 + +0.6 150,408 + -0.4 150,409 - +0.6 150,409 - +0.8 150,409 - +0.2 150,409 - +1.2 150,409 - -2.3 150,551 + OKGIIK_00680 0.39 +1.5 150,551 + OKGIIK_00680 0.39 -1.1 150,551 + OKGIIK_00680 0.39 -0.9 150,551 + OKGIIK_00680 0.39 +1.8 150,552 - OKGIIK_00680 0.39 +0.9 150,552 - OKGIIK_00680 0.39 +0.0 150,552 - OKGIIK_00680 0.39 -1.6 150,552 - OKGIIK_00680 0.39 +1.0 150,681 - OKGIIK_00680 0.86 -0.4 150,681 - OKGIIK_00680 0.86 -0.1
Or see this region's nucleotide sequence