Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00470

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00465 and OKGIIK_00470 are separated by 362 nucleotidesOKGIIK_00470 and yqfA are separated by 91 nucleotidesyqfA and OKGIIK_00480 are separated by 2 nucleotides OKGIIK_00465: OKGIIK_00465 - Energy transducer TonB, at 106,318 to 106,986 _00465 OKGIIK_00470: OKGIIK_00470 - Alanyl-tRNA synthetase, at 107,349 to 107,783 _00470 OKGIIK_00475: yqfA - putative membrane channel-forming protein YqfA, hemolysin III family, at 107,875 to 108,540 yqfA OKGIIK_00480: OKGIIK_00480 - TfoX-N domain-containing protein, at 108,543 to 108,869 _00480 Position (kb) 107 108Strain fitness (log2 ratio) -2 -1 0 1 2at 106.575 kb on - strand, within OKGIIK_00465at 106.584 kb on + strand, within OKGIIK_00465at 106.585 kb on - strand, within OKGIIK_00465at 106.963 kb on + strandat 106.964 kb on - strandat 106.964 kb on - strandat 106.964 kb on - strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.095 kb on + strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.113 kb on + strandat 107.113 kb on + strandat 107.113 kb on + strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.214 kb on + strandat 107.215 kb on - strandat 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.476 kb on - strand, within OKGIIK_00470at 107.641 kb on - strand, within OKGIIK_00470at 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.840 kb on + strandat 107.845 kb on + strandat 107.845 kb on + strandat 107.845 kb on + strandat 107.846 kb on - strandat 107.908 kb on + strandat 107.909 kb on - strandat 108.067 kb on + strand, within yqfAat 108.067 kb on + strand, within yqfAat 108.068 kb on - strand, within yqfAat 108.068 kb on - strand, within yqfAat 108.068 kb on - strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.085 kb on + strand, within yqfAat 108.086 kb on - strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.148 kb on + strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.149 kb on - strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.169 kb on + strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.170 kb on - strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.307 kb on + strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.308 kb on - strand, within yqfAat 108.406 kb on + strand, within yqfAat 108.406 kb on + strand, within yqfAat 108.406 kb on + strand, within yqfAat 108.406 kb on + strand, within yqfAat 108.406 kb on + strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.407 kb on - strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.408 kb on + strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.409 kb on - strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.427 kb on + strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.428 kb on - strand, within yqfAat 108.448 kb on + strand, within yqfAat 108.449 kb on - strand, within yqfAat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.517 kb on + strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.518 kb on - strandat 108.520 kb on - strandat 108.651 kb on + strand, within OKGIIK_00480at 108.651 kb on + strand, within OKGIIK_00480at 108.652 kb on - strand, within OKGIIK_00480at 108.652 kb on - strand, within OKGIIK_00480at 108.652 kb on - strand, within OKGIIK_00480at 108.652 kb on - strand, within OKGIIK_00480at 108.652 kb on - strand, within OKGIIK_00480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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106,575 - OKGIIK_00465 0.38 -0.9
106,584 + OKGIIK_00465 0.40 +1.7
106,585 - OKGIIK_00465 0.40 -0.6
106,963 + -0.7
106,964 - -1.2
106,964 - +0.8
106,964 - -1.2
107,068 + +2.0
107,068 + +0.0
107,068 + +1.4
107,068 + -0.4
107,068 + -2.1
107,069 - -0.2
107,069 - +0.5
107,069 - +1.2
107,069 - +0.2
107,069 - -1.2
107,069 - -0.0
107,069 - -2.4
107,069 - +1.1
107,095 + +0.8
107,096 - +1.2
107,096 - -1.5
107,096 - -0.4
107,113 + -0.6
107,113 + -0.3
107,113 + +1.9
107,114 - -0.1
107,114 - +0.2
107,114 - +1.2
107,114 - -0.8
107,214 + -0.4
107,215 - +0.6
107,475 + OKGIIK_00470 0.29 -0.1
107,475 + OKGIIK_00470 0.29 -0.8
107,475 + OKGIIK_00470 0.29 +1.4
107,475 + OKGIIK_00470 0.29 +2.2
107,475 + OKGIIK_00470 0.29 -0.9
107,475 + OKGIIK_00470 0.29 +0.1
107,476 - OKGIIK_00470 0.29 -0.9
107,641 - OKGIIK_00470 0.67 -0.8
107,817 + +1.1
107,817 + -0.9
107,817 + -0.8
107,817 + +0.9
107,817 + -0.6
107,817 + -0.0
107,817 + -0.4
107,817 + -0.4
107,818 - +0.8
107,818 - -2.3
107,818 - +1.2
107,818 - +0.4
107,818 - +1.1
107,818 - -0.6
107,818 - +0.4
107,840 + -0.1
107,845 + +0.2
107,845 + -0.1
107,845 + -0.2
107,846 - -0.8
107,908 + +1.5
107,909 - -1.2
108,067 + yqfA OKGIIK_00475 0.29 -0.9
108,067 + yqfA OKGIIK_00475 0.29 -0.5
108,068 - yqfA OKGIIK_00475 0.29 +0.6
108,068 - yqfA OKGIIK_00475 0.29 -1.4
108,068 - yqfA OKGIIK_00475 0.29 -1.9
108,085 + yqfA OKGIIK_00475 0.32 -1.1
108,085 + yqfA OKGIIK_00475 0.32 +0.1
108,085 + yqfA OKGIIK_00475 0.32 +1.2
108,085 + yqfA OKGIIK_00475 0.32 +0.0
108,085 + yqfA OKGIIK_00475 0.32 -0.3
108,085 + yqfA OKGIIK_00475 0.32 -0.7
108,086 - yqfA OKGIIK_00475 0.32 -0.4
108,148 + yqfA OKGIIK_00475 0.41 +0.6
108,148 + yqfA OKGIIK_00475 0.41 -0.4
108,148 + yqfA OKGIIK_00475 0.41 -1.5
108,148 + yqfA OKGIIK_00475 0.41 -0.1
108,148 + yqfA OKGIIK_00475 0.41 -0.7
108,148 + yqfA OKGIIK_00475 0.41 -2.5
108,148 + yqfA OKGIIK_00475 0.41 -0.1
108,149 - yqfA OKGIIK_00475 0.41 -0.8
108,149 - yqfA OKGIIK_00475 0.41 -1.2
108,149 - yqfA OKGIIK_00475 0.41 -0.4
108,149 - yqfA OKGIIK_00475 0.41 -1.1
108,149 - yqfA OKGIIK_00475 0.41 -0.5
108,149 - yqfA OKGIIK_00475 0.41 +0.2
108,149 - yqfA OKGIIK_00475 0.41 +2.5
108,149 - yqfA OKGIIK_00475 0.41 -0.8
108,169 + yqfA OKGIIK_00475 0.44 -0.4
108,169 + yqfA OKGIIK_00475 0.44 -0.7
108,169 + yqfA OKGIIK_00475 0.44 +0.5
108,169 + yqfA OKGIIK_00475 0.44 +0.9
108,169 + yqfA OKGIIK_00475 0.44 -2.6
108,169 + yqfA OKGIIK_00475 0.44 +0.8
108,169 + yqfA OKGIIK_00475 0.44 +0.2
108,169 + yqfA OKGIIK_00475 0.44 -0.2
108,169 + yqfA OKGIIK_00475 0.44 -0.1
108,169 + yqfA OKGIIK_00475 0.44 -0.2
108,170 - yqfA OKGIIK_00475 0.44 +0.2
108,170 - yqfA OKGIIK_00475 0.44 +1.6
108,170 - yqfA OKGIIK_00475 0.44 +0.6
108,170 - yqfA OKGIIK_00475 0.44 +0.2
108,170 - yqfA OKGIIK_00475 0.44 -1.9
108,170 - yqfA OKGIIK_00475 0.44 -0.4
108,307 + yqfA OKGIIK_00475 0.65 -0.8
108,307 + yqfA OKGIIK_00475 0.65 -1.5
108,307 + yqfA OKGIIK_00475 0.65 -0.6
108,307 + yqfA OKGIIK_00475 0.65 -1.4
108,307 + yqfA OKGIIK_00475 0.65 +0.2
108,307 + yqfA OKGIIK_00475 0.65 -0.9
108,307 + yqfA OKGIIK_00475 0.65 +0.1
108,307 + yqfA OKGIIK_00475 0.65 -0.3
108,308 - yqfA OKGIIK_00475 0.65 -0.2
108,308 - yqfA OKGIIK_00475 0.65 -0.4
108,308 - yqfA OKGIIK_00475 0.65 +0.9
108,308 - yqfA OKGIIK_00475 0.65 +0.3
108,308 - yqfA OKGIIK_00475 0.65 +0.9
108,308 - yqfA OKGIIK_00475 0.65 +1.2
108,406 + yqfA OKGIIK_00475 0.80 +0.9
108,406 + yqfA OKGIIK_00475 0.80 -0.6
108,406 + yqfA OKGIIK_00475 0.80 -1.1
108,406 + yqfA OKGIIK_00475 0.80 +0.2
108,406 + yqfA OKGIIK_00475 0.80 -1.4
108,407 - yqfA OKGIIK_00475 0.80 +0.1
108,407 - yqfA OKGIIK_00475 0.80 +0.4
108,407 - yqfA OKGIIK_00475 0.80 -0.9
108,407 - yqfA OKGIIK_00475 0.80 -0.3
108,407 - yqfA OKGIIK_00475 0.80 -0.1
108,407 - yqfA OKGIIK_00475 0.80 +0.2
108,408 + yqfA OKGIIK_00475 0.80 +0.3
108,408 + yqfA OKGIIK_00475 0.80 -1.2
108,408 + yqfA OKGIIK_00475 0.80 -0.2
108,408 + yqfA OKGIIK_00475 0.80 -0.7
108,408 + yqfA OKGIIK_00475 0.80 +1.6
108,408 + yqfA OKGIIK_00475 0.80 -0.1
108,409 - yqfA OKGIIK_00475 0.80 +1.1
108,409 - yqfA OKGIIK_00475 0.80 -1.1
108,409 - yqfA OKGIIK_00475 0.80 -2.0
108,409 - yqfA OKGIIK_00475 0.80 -1.1
108,409 - yqfA OKGIIK_00475 0.80 -1.8
108,409 - yqfA OKGIIK_00475 0.80 -0.7
108,409 - yqfA OKGIIK_00475 0.80 +1.5
108,409 - yqfA OKGIIK_00475 0.80 -0.5
108,409 - yqfA OKGIIK_00475 0.80 -0.3
108,409 - yqfA OKGIIK_00475 0.80 +0.4
108,427 + yqfA OKGIIK_00475 0.83 -1.0
108,427 + yqfA OKGIIK_00475 0.83 -0.4
108,427 + yqfA OKGIIK_00475 0.83 -0.4
108,427 + yqfA OKGIIK_00475 0.83 +0.1
108,427 + yqfA OKGIIK_00475 0.83 +2.2
108,427 + yqfA OKGIIK_00475 0.83 +0.3
108,427 + yqfA OKGIIK_00475 0.83 -0.1
108,428 - yqfA OKGIIK_00475 0.83 -0.6
108,428 - yqfA OKGIIK_00475 0.83 -0.1
108,428 - yqfA OKGIIK_00475 0.83 -0.9
108,428 - yqfA OKGIIK_00475 0.83 +0.1
108,428 - yqfA OKGIIK_00475 0.83 -0.1
108,428 - yqfA OKGIIK_00475 0.83 +0.5
108,428 - yqfA OKGIIK_00475 0.83 +0.2
108,428 - yqfA OKGIIK_00475 0.83 -1.1
108,428 - yqfA OKGIIK_00475 0.83 -1.2
108,428 - yqfA OKGIIK_00475 0.83 -0.1
108,448 + yqfA OKGIIK_00475 0.86 +0.1
108,449 - yqfA OKGIIK_00475 0.86 -0.2
108,517 + -1.1
108,517 + -0.8
108,517 + +0.3
108,517 + -1.2
108,517 + +0.5
108,517 + -1.9
108,517 + +0.9
108,517 + +0.6
108,517 + +2.2
108,517 + -0.6
108,517 + -1.0
108,518 - +0.2
108,518 - +0.9
108,518 - +1.9
108,518 - -0.9
108,518 - -1.2
108,518 - -0.8
108,518 - -0.6
108,518 - +0.1
108,518 - -0.4
108,518 - -1.4
108,518 - +0.2
108,518 - -0.3
108,520 - -0.6
108,651 + OKGIIK_00480 0.33 +0.7
108,651 + OKGIIK_00480 0.33 +0.3
108,652 - OKGIIK_00480 0.33 +0.5
108,652 - OKGIIK_00480 0.33 +0.2
108,652 - OKGIIK_00480 0.33 -0.9
108,652 - OKGIIK_00480 0.33 -0.0
108,652 - OKGIIK_00480 0.33 -0.8

Or see this region's nucleotide sequence