Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00465 and OKGIIK_00470 are separated by 362 nucleotides OKGIIK_00470 and yqfA are separated by 91 nucleotides yqfA and OKGIIK_00480 are separated by 2 nucleotides
OKGIIK_00465: OKGIIK_00465 - Energy transducer TonB, at 106,318 to 106,986
_00465
OKGIIK_00470: OKGIIK_00470 - Alanyl-tRNA synthetase, at 107,349 to 107,783
_00470
OKGIIK_00475: yqfA - putative membrane channel-forming protein YqfA, hemolysin III family, at 107,875 to 108,540
yqfA
OKGIIK_00480: OKGIIK_00480 - TfoX-N domain-containing protein, at 108,543 to 108,869
_00480
Position (kb)
107
108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 106.575 kb on - strand, within OKGIIK_00465 at 106.584 kb on + strand, within OKGIIK_00465 at 106.585 kb on - strand, within OKGIIK_00465 at 106.963 kb on + strand at 106.964 kb on - strand at 106.964 kb on - strand at 106.964 kb on - strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.095 kb on + strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.113 kb on + strand at 107.113 kb on + strand at 107.113 kb on + strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.214 kb on + strand at 107.215 kb on - strand at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.476 kb on - strand, within OKGIIK_00470 at 107.641 kb on - strand, within OKGIIK_00470 at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.840 kb on + strand at 107.845 kb on + strand at 107.845 kb on + strand at 107.845 kb on + strand at 107.846 kb on - strand at 107.908 kb on + strand at 107.909 kb on - strand at 108.067 kb on + strand, within yqfA at 108.067 kb on + strand, within yqfA at 108.068 kb on - strand, within yqfA at 108.068 kb on - strand, within yqfA at 108.068 kb on - strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.085 kb on + strand, within yqfA at 108.086 kb on - strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.148 kb on + strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.149 kb on - strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.169 kb on + strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.170 kb on - strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.307 kb on + strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.308 kb on - strand, within yqfA at 108.406 kb on + strand, within yqfA at 108.406 kb on + strand, within yqfA at 108.406 kb on + strand, within yqfA at 108.406 kb on + strand, within yqfA at 108.406 kb on + strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.407 kb on - strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.408 kb on + strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.409 kb on - strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.427 kb on + strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.428 kb on - strand, within yqfA at 108.448 kb on + strand, within yqfA at 108.449 kb on - strand, within yqfA at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.517 kb on + strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.518 kb on - strand at 108.520 kb on - strand at 108.651 kb on + strand, within OKGIIK_00480 at 108.651 kb on + strand, within OKGIIK_00480 at 108.652 kb on - strand, within OKGIIK_00480 at 108.652 kb on - strand, within OKGIIK_00480 at 108.652 kb on - strand, within OKGIIK_00480 at 108.652 kb on - strand, within OKGIIK_00480 at 108.652 kb on - strand, within OKGIIK_00480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 106,575 - OKGIIK_00465 0.38 -0.9 106,584 + OKGIIK_00465 0.40 +1.7 106,585 - OKGIIK_00465 0.40 -0.6 106,963 + -0.7 106,964 - -1.2 106,964 - +0.8 106,964 - -1.2 107,068 + +2.0 107,068 + +0.0 107,068 + +1.4 107,068 + -0.4 107,068 + -2.1 107,069 - -0.2 107,069 - +0.5 107,069 - +1.2 107,069 - +0.2 107,069 - -1.2 107,069 - -0.0 107,069 - -2.4 107,069 - +1.1 107,095 + +0.8 107,096 - +1.2 107,096 - -1.5 107,096 - -0.4 107,113 + -0.6 107,113 + -0.3 107,113 + +1.9 107,114 - -0.1 107,114 - +0.2 107,114 - +1.2 107,114 - -0.8 107,214 + -0.4 107,215 - +0.6 107,475 + OKGIIK_00470 0.29 -0.1 107,475 + OKGIIK_00470 0.29 -0.8 107,475 + OKGIIK_00470 0.29 +1.4 107,475 + OKGIIK_00470 0.29 +2.2 107,475 + OKGIIK_00470 0.29 -0.9 107,475 + OKGIIK_00470 0.29 +0.1 107,476 - OKGIIK_00470 0.29 -0.9 107,641 - OKGIIK_00470 0.67 -0.8 107,817 + +1.1 107,817 + -0.9 107,817 + -0.8 107,817 + +0.9 107,817 + -0.6 107,817 + -0.0 107,817 + -0.4 107,817 + -0.4 107,818 - +0.8 107,818 - -2.3 107,818 - +1.2 107,818 - +0.4 107,818 - +1.1 107,818 - -0.6 107,818 - +0.4 107,840 + -0.1 107,845 + +0.2 107,845 + -0.1 107,845 + -0.2 107,846 - -0.8 107,908 + +1.5 107,909 - -1.2 108,067 + yqfA OKGIIK_00475 0.29 -0.9 108,067 + yqfA OKGIIK_00475 0.29 -0.5 108,068 - yqfA OKGIIK_00475 0.29 +0.6 108,068 - yqfA OKGIIK_00475 0.29 -1.4 108,068 - yqfA OKGIIK_00475 0.29 -1.9 108,085 + yqfA OKGIIK_00475 0.32 -1.1 108,085 + yqfA OKGIIK_00475 0.32 +0.1 108,085 + yqfA OKGIIK_00475 0.32 +1.2 108,085 + yqfA OKGIIK_00475 0.32 +0.0 108,085 + yqfA OKGIIK_00475 0.32 -0.3 108,085 + yqfA OKGIIK_00475 0.32 -0.7 108,086 - yqfA OKGIIK_00475 0.32 -0.4 108,148 + yqfA OKGIIK_00475 0.41 +0.6 108,148 + yqfA OKGIIK_00475 0.41 -0.4 108,148 + yqfA OKGIIK_00475 0.41 -1.5 108,148 + yqfA OKGIIK_00475 0.41 -0.1 108,148 + yqfA OKGIIK_00475 0.41 -0.7 108,148 + yqfA OKGIIK_00475 0.41 -2.5 108,148 + yqfA OKGIIK_00475 0.41 -0.1 108,149 - yqfA OKGIIK_00475 0.41 -0.8 108,149 - yqfA OKGIIK_00475 0.41 -1.2 108,149 - yqfA OKGIIK_00475 0.41 -0.4 108,149 - yqfA OKGIIK_00475 0.41 -1.1 108,149 - yqfA OKGIIK_00475 0.41 -0.5 108,149 - yqfA OKGIIK_00475 0.41 +0.2 108,149 - yqfA OKGIIK_00475 0.41 +2.5 108,149 - yqfA OKGIIK_00475 0.41 -0.8 108,169 + yqfA OKGIIK_00475 0.44 -0.4 108,169 + yqfA OKGIIK_00475 0.44 -0.7 108,169 + yqfA OKGIIK_00475 0.44 +0.5 108,169 + yqfA OKGIIK_00475 0.44 +0.9 108,169 + yqfA OKGIIK_00475 0.44 -2.6 108,169 + yqfA OKGIIK_00475 0.44 +0.8 108,169 + yqfA OKGIIK_00475 0.44 +0.2 108,169 + yqfA OKGIIK_00475 0.44 -0.2 108,169 + yqfA OKGIIK_00475 0.44 -0.1 108,169 + yqfA OKGIIK_00475 0.44 -0.2 108,170 - yqfA OKGIIK_00475 0.44 +0.2 108,170 - yqfA OKGIIK_00475 0.44 +1.6 108,170 - yqfA OKGIIK_00475 0.44 +0.6 108,170 - yqfA OKGIIK_00475 0.44 +0.2 108,170 - yqfA OKGIIK_00475 0.44 -1.9 108,170 - yqfA OKGIIK_00475 0.44 -0.4 108,307 + yqfA OKGIIK_00475 0.65 -0.8 108,307 + yqfA OKGIIK_00475 0.65 -1.5 108,307 + yqfA OKGIIK_00475 0.65 -0.6 108,307 + yqfA OKGIIK_00475 0.65 -1.4 108,307 + yqfA OKGIIK_00475 0.65 +0.2 108,307 + yqfA OKGIIK_00475 0.65 -0.9 108,307 + yqfA OKGIIK_00475 0.65 +0.1 108,307 + yqfA OKGIIK_00475 0.65 -0.3 108,308 - yqfA OKGIIK_00475 0.65 -0.2 108,308 - yqfA OKGIIK_00475 0.65 -0.4 108,308 - yqfA OKGIIK_00475 0.65 +0.9 108,308 - yqfA OKGIIK_00475 0.65 +0.3 108,308 - yqfA OKGIIK_00475 0.65 +0.9 108,308 - yqfA OKGIIK_00475 0.65 +1.2 108,406 + yqfA OKGIIK_00475 0.80 +0.9 108,406 + yqfA OKGIIK_00475 0.80 -0.6 108,406 + yqfA OKGIIK_00475 0.80 -1.1 108,406 + yqfA OKGIIK_00475 0.80 +0.2 108,406 + yqfA OKGIIK_00475 0.80 -1.4 108,407 - yqfA OKGIIK_00475 0.80 +0.1 108,407 - yqfA OKGIIK_00475 0.80 +0.4 108,407 - yqfA OKGIIK_00475 0.80 -0.9 108,407 - yqfA OKGIIK_00475 0.80 -0.3 108,407 - yqfA OKGIIK_00475 0.80 -0.1 108,407 - yqfA OKGIIK_00475 0.80 +0.2 108,408 + yqfA OKGIIK_00475 0.80 +0.3 108,408 + yqfA OKGIIK_00475 0.80 -1.2 108,408 + yqfA OKGIIK_00475 0.80 -0.2 108,408 + yqfA OKGIIK_00475 0.80 -0.7 108,408 + yqfA OKGIIK_00475 0.80 +1.6 108,408 + yqfA OKGIIK_00475 0.80 -0.1 108,409 - yqfA OKGIIK_00475 0.80 +1.1 108,409 - yqfA OKGIIK_00475 0.80 -1.1 108,409 - yqfA OKGIIK_00475 0.80 -2.0 108,409 - yqfA OKGIIK_00475 0.80 -1.1 108,409 - yqfA OKGIIK_00475 0.80 -1.8 108,409 - yqfA OKGIIK_00475 0.80 -0.7 108,409 - yqfA OKGIIK_00475 0.80 +1.5 108,409 - yqfA OKGIIK_00475 0.80 -0.5 108,409 - yqfA OKGIIK_00475 0.80 -0.3 108,409 - yqfA OKGIIK_00475 0.80 +0.4 108,427 + yqfA OKGIIK_00475 0.83 -1.0 108,427 + yqfA OKGIIK_00475 0.83 -0.4 108,427 + yqfA OKGIIK_00475 0.83 -0.4 108,427 + yqfA OKGIIK_00475 0.83 +0.1 108,427 + yqfA OKGIIK_00475 0.83 +2.2 108,427 + yqfA OKGIIK_00475 0.83 +0.3 108,427 + yqfA OKGIIK_00475 0.83 -0.1 108,428 - yqfA OKGIIK_00475 0.83 -0.6 108,428 - yqfA OKGIIK_00475 0.83 -0.1 108,428 - yqfA OKGIIK_00475 0.83 -0.9 108,428 - yqfA OKGIIK_00475 0.83 +0.1 108,428 - yqfA OKGIIK_00475 0.83 -0.1 108,428 - yqfA OKGIIK_00475 0.83 +0.5 108,428 - yqfA OKGIIK_00475 0.83 +0.2 108,428 - yqfA OKGIIK_00475 0.83 -1.1 108,428 - yqfA OKGIIK_00475 0.83 -1.2 108,428 - yqfA OKGIIK_00475 0.83 -0.1 108,448 + yqfA OKGIIK_00475 0.86 +0.1 108,449 - yqfA OKGIIK_00475 0.86 -0.2 108,517 + -1.1 108,517 + -0.8 108,517 + +0.3 108,517 + -1.2 108,517 + +0.5 108,517 + -1.9 108,517 + +0.9 108,517 + +0.6 108,517 + +2.2 108,517 + -0.6 108,517 + -1.0 108,518 - +0.2 108,518 - +0.9 108,518 - +1.9 108,518 - -0.9 108,518 - -1.2 108,518 - -0.8 108,518 - -0.6 108,518 - +0.1 108,518 - -0.4 108,518 - -1.4 108,518 - +0.2 108,518 - -0.3 108,520 - -0.6 108,651 + OKGIIK_00480 0.33 +0.7 108,651 + OKGIIK_00480 0.33 +0.3 108,652 - OKGIIK_00480 0.33 +0.5 108,652 - OKGIIK_00480 0.33 +0.2 108,652 - OKGIIK_00480 0.33 -0.9 108,652 - OKGIIK_00480 0.33 -0.0 108,652 - OKGIIK_00480 0.33 -0.8
Or see this region's nucleotide sequence