Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rodA and OKGIIK_00065 are separated by 121 nucleotides OKGIIK_00065 and OKGIIK_00070 overlap by 4 nucleotides
OKGIIK_00060: rodA - rod shape-determining protein RodA, at 13,666 to 14,781
rodA
OKGIIK_00065: OKGIIK_00065 - Gluconate 2-dehydrogenase, at 14,903 to 15,610
_00065
OKGIIK_00070: OKGIIK_00070 - GMC family oxidoreductase, at 15,607 to 17,382
_00070
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 15.035 kb on + strand, within OKGIIK_00065 at 15.035 kb on + strand, within OKGIIK_00065 at 15.036 kb on - strand, within OKGIIK_00065 at 15.036 kb on - strand, within OKGIIK_00065 at 15.036 kb on - strand, within OKGIIK_00065 at 15.036 kb on - strand, within OKGIIK_00065 at 15.036 kb on - strand, within OKGIIK_00065 at 15.047 kb on + strand, within OKGIIK_00065 at 15.047 kb on + strand, within OKGIIK_00065 at 15.047 kb on + strand, within OKGIIK_00065 at 15.048 kb on - strand, within OKGIIK_00065 at 15.048 kb on - strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.197 kb on + strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.198 kb on - strand, within OKGIIK_00065 at 15.242 kb on + strand, within OKGIIK_00065 at 15.243 kb on - strand, within OKGIIK_00065 at 15.273 kb on - strand, within OKGIIK_00065 at 15.273 kb on - strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.455 kb on + strand, within OKGIIK_00065 at 15.456 kb on - strand, within OKGIIK_00065 at 15.456 kb on - strand, within OKGIIK_00065 at 15.456 kb on - strand, within OKGIIK_00065 at 15.473 kb on + strand, within OKGIIK_00065 at 15.473 kb on + strand, within OKGIIK_00065 at 15.474 kb on - strand, within OKGIIK_00065 at 15.474 kb on - strand, within OKGIIK_00065 at 15.474 kb on - strand, within OKGIIK_00065 at 15.474 kb on - strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.536 kb on + strand, within OKGIIK_00065 at 15.537 kb on - strand, within OKGIIK_00065 at 15.537 kb on - strand, within OKGIIK_00065 at 15.537 kb on - strand, within OKGIIK_00065 at 15.569 kb on + strand at 15.570 kb on - strand at 15.724 kb on + strand at 15.725 kb on - strand at 15.725 kb on - strand at 15.725 kb on - strand at 15.725 kb on - strand at 15.751 kb on + strand at 15.752 kb on - strand at 15.857 kb on + strand, within OKGIIK_00070 at 15.858 kb on - strand, within OKGIIK_00070 at 15.858 kb on - strand, within OKGIIK_00070 at 15.863 kb on - strand, within OKGIIK_00070 at 15.863 kb on - strand, within OKGIIK_00070 at 15.871 kb on + strand, within OKGIIK_00070 at 15.872 kb on - strand, within OKGIIK_00070 at 15.872 kb on - strand, within OKGIIK_00070 at 15.872 kb on - strand, within OKGIIK_00070 at 15.872 kb on - strand, within OKGIIK_00070 at 15.872 kb on - strand, within OKGIIK_00070 at 15.935 kb on - strand, within OKGIIK_00070 at 16.027 kb on + strand, within OKGIIK_00070 at 16.027 kb on + strand, within OKGIIK_00070 at 16.027 kb on + strand, within OKGIIK_00070 at 16.027 kb on + strand, within OKGIIK_00070 at 16.028 kb on - strand, within OKGIIK_00070 at 16.028 kb on - strand, within OKGIIK_00070 at 16.028 kb on - strand, within OKGIIK_00070 at 16.028 kb on - strand, within OKGIIK_00070 at 16.039 kb on + strand, within OKGIIK_00070 at 16.039 kb on + strand, within OKGIIK_00070 at 16.039 kb on + strand, within OKGIIK_00070 at 16.039 kb on + strand, within OKGIIK_00070 at 16.040 kb on - strand, within OKGIIK_00070 at 16.040 kb on - strand, within OKGIIK_00070 at 16.040 kb on - strand, within OKGIIK_00070 at 16.040 kb on - strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.075 kb on + strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.076 kb on - strand, within OKGIIK_00070 at 16.276 kb on + strand, within OKGIIK_00070 at 16.276 kb on + strand, within OKGIIK_00070 at 16.276 kb on + strand, within OKGIIK_00070 at 16.277 kb on - strand, within OKGIIK_00070 at 16.277 kb on - strand, within OKGIIK_00070 at 16.277 kb on - strand, within OKGIIK_00070 at 16.324 kb on + strand, within OKGIIK_00070 at 16.324 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.351 kb on + strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.352 kb on - strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.483 kb on + strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.484 kb on - strand, within OKGIIK_00070 at 16.594 kb on + strand, within OKGIIK_00070 at 16.594 kb on + strand, within OKGIIK_00070 at 16.595 kb on - strand, within OKGIIK_00070 at 16.595 kb on - strand, within OKGIIK_00070 at 16.595 kb on - strand, within OKGIIK_00070
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 15,035 + OKGIIK_00065 0.19 +0.3 15,035 + OKGIIK_00065 0.19 -0.1 15,036 - OKGIIK_00065 0.19 -0.6 15,036 - OKGIIK_00065 0.19 -1.1 15,036 - OKGIIK_00065 0.19 -1.2 15,036 - OKGIIK_00065 0.19 +0.4 15,036 - OKGIIK_00065 0.19 +0.3 15,047 + OKGIIK_00065 0.20 -1.9 15,047 + OKGIIK_00065 0.20 -1.2 15,047 + OKGIIK_00065 0.20 -0.8 15,048 - OKGIIK_00065 0.20 -1.1 15,048 - OKGIIK_00065 0.20 -1.9 15,197 + OKGIIK_00065 0.42 +0.9 15,197 + OKGIIK_00065 0.42 +1.6 15,197 + OKGIIK_00065 0.42 -0.1 15,197 + OKGIIK_00065 0.42 -1.5 15,197 + OKGIIK_00065 0.42 -0.4 15,197 + OKGIIK_00065 0.42 -1.2 15,197 + OKGIIK_00065 0.42 -0.1 15,197 + OKGIIK_00065 0.42 -1.5 15,197 + OKGIIK_00065 0.42 +0.2 15,197 + OKGIIK_00065 0.42 -1.2 15,197 + OKGIIK_00065 0.42 -2.5 15,197 + OKGIIK_00065 0.42 +0.6 15,197 + OKGIIK_00065 0.42 -0.8 15,197 + OKGIIK_00065 0.42 +0.5 15,197 + OKGIIK_00065 0.42 -1.6 15,197 + OKGIIK_00065 0.42 -0.6 15,197 + OKGIIK_00065 0.42 +0.1 15,197 + OKGIIK_00065 0.42 +1.7 15,198 - OKGIIK_00065 0.42 -0.1 15,198 - OKGIIK_00065 0.42 -0.6 15,198 - OKGIIK_00065 0.42 +0.3 15,198 - OKGIIK_00065 0.42 +0.6 15,198 - OKGIIK_00065 0.42 -0.5 15,198 - OKGIIK_00065 0.42 -0.2 15,198 - OKGIIK_00065 0.42 +0.4 15,198 - OKGIIK_00065 0.42 +1.8 15,198 - OKGIIK_00065 0.42 +1.2 15,198 - OKGIIK_00065 0.42 -0.2 15,198 - OKGIIK_00065 0.42 +1.1 15,198 - OKGIIK_00065 0.42 -0.1 15,198 - OKGIIK_00065 0.42 -0.9 15,198 - OKGIIK_00065 0.42 -0.7 15,198 - OKGIIK_00065 0.42 -0.2 15,198 - OKGIIK_00065 0.42 -0.9 15,198 - OKGIIK_00065 0.42 -1.0 15,198 - OKGIIK_00065 0.42 -0.6 15,198 - OKGIIK_00065 0.42 +0.0 15,198 - OKGIIK_00065 0.42 +1.5 15,198 - OKGIIK_00065 0.42 -0.6 15,242 + OKGIIK_00065 0.48 +0.2 15,243 - OKGIIK_00065 0.48 -1.4 15,273 - OKGIIK_00065 0.52 +1.2 15,273 - OKGIIK_00065 0.52 -0.2 15,455 + OKGIIK_00065 0.78 -0.8 15,455 + OKGIIK_00065 0.78 -0.1 15,455 + OKGIIK_00065 0.78 -1.1 15,455 + OKGIIK_00065 0.78 -1.2 15,455 + OKGIIK_00065 0.78 -0.4 15,455 + OKGIIK_00065 0.78 +0.8 15,456 - OKGIIK_00065 0.78 -0.9 15,456 - OKGIIK_00065 0.78 +0.4 15,456 - OKGIIK_00065 0.78 +0.0 15,473 + OKGIIK_00065 0.81 +1.1 15,473 + OKGIIK_00065 0.81 +0.2 15,474 - OKGIIK_00065 0.81 +0.0 15,474 - OKGIIK_00065 0.81 +1.1 15,474 - OKGIIK_00065 0.81 -0.3 15,474 - OKGIIK_00065 0.81 -1.4 15,536 + OKGIIK_00065 0.89 -1.9 15,536 + OKGIIK_00065 0.89 -1.4 15,536 + OKGIIK_00065 0.89 -0.1 15,536 + OKGIIK_00065 0.89 -0.3 15,536 + OKGIIK_00065 0.89 -0.6 15,536 + OKGIIK_00065 0.89 -0.2 15,537 - OKGIIK_00065 0.90 +2.2 15,537 - OKGIIK_00065 0.90 +1.0 15,537 - OKGIIK_00065 0.90 -0.9 15,569 + +1.4 15,570 - -0.1 15,724 + -1.5 15,725 - +1.0 15,725 - -3.3 15,725 - +1.2 15,725 - -1.5 15,751 + +0.2 15,752 - +1.2 15,857 + OKGIIK_00070 0.14 -1.8 15,858 - OKGIIK_00070 0.14 -0.8 15,858 - OKGIIK_00070 0.14 -0.0 15,863 - OKGIIK_00070 0.14 -2.0 15,863 - OKGIIK_00070 0.14 +0.2 15,871 + OKGIIK_00070 0.15 -0.6 15,872 - OKGIIK_00070 0.15 +1.2 15,872 - OKGIIK_00070 0.15 +1.2 15,872 - OKGIIK_00070 0.15 -0.5 15,872 - OKGIIK_00070 0.15 -0.9 15,872 - OKGIIK_00070 0.15 +0.1 15,935 - OKGIIK_00070 0.18 -0.1 16,027 + OKGIIK_00070 0.24 -0.2 16,027 + OKGIIK_00070 0.24 -0.9 16,027 + OKGIIK_00070 0.24 +0.8 16,027 + OKGIIK_00070 0.24 +0.8 16,028 - OKGIIK_00070 0.24 -1.7 16,028 - OKGIIK_00070 0.24 -0.9 16,028 - OKGIIK_00070 0.24 -0.3 16,028 - OKGIIK_00070 0.24 -1.2 16,039 + OKGIIK_00070 0.24 +0.0 16,039 + OKGIIK_00070 0.24 -1.0 16,039 + OKGIIK_00070 0.24 +0.1 16,039 + OKGIIK_00070 0.24 +0.6 16,040 - OKGIIK_00070 0.24 +0.2 16,040 - OKGIIK_00070 0.24 +0.2 16,040 - OKGIIK_00070 0.24 -0.4 16,040 - OKGIIK_00070 0.24 -1.1 16,075 + OKGIIK_00070 0.26 -0.4 16,075 + OKGIIK_00070 0.26 +0.7 16,075 + OKGIIK_00070 0.26 -0.6 16,075 + OKGIIK_00070 0.26 -0.9 16,075 + OKGIIK_00070 0.26 +0.2 16,075 + OKGIIK_00070 0.26 +0.1 16,075 + OKGIIK_00070 0.26 -1.1 16,075 + OKGIIK_00070 0.26 -0.6 16,075 + OKGIIK_00070 0.26 -0.4 16,075 + OKGIIK_00070 0.26 +0.9 16,075 + OKGIIK_00070 0.26 -0.9 16,075 + OKGIIK_00070 0.26 -0.1 16,075 + OKGIIK_00070 0.26 +5.9 16,076 - OKGIIK_00070 0.26 -0.1 16,076 - OKGIIK_00070 0.26 -0.8 16,076 - OKGIIK_00070 0.26 +0.9 16,076 - OKGIIK_00070 0.26 -0.3 16,076 - OKGIIK_00070 0.26 -0.9 16,076 - OKGIIK_00070 0.26 -0.3 16,076 - OKGIIK_00070 0.26 -0.0 16,076 - OKGIIK_00070 0.26 -1.2 16,076 - OKGIIK_00070 0.26 +1.0 16,076 - OKGIIK_00070 0.26 -0.5 16,076 - OKGIIK_00070 0.26 +0.3 16,276 + OKGIIK_00070 0.38 +0.5 16,276 + OKGIIK_00070 0.38 -0.9 16,276 + OKGIIK_00070 0.38 -1.4 16,277 - OKGIIK_00070 0.38 -1.1 16,277 - OKGIIK_00070 0.38 -0.1 16,277 - OKGIIK_00070 0.38 -0.1 16,324 + OKGIIK_00070 0.40 -1.2 16,324 + OKGIIK_00070 0.40 -1.4 16,351 + OKGIIK_00070 0.42 +0.5 16,351 + OKGIIK_00070 0.42 +0.7 16,351 + OKGIIK_00070 0.42 -0.1 16,351 + OKGIIK_00070 0.42 -0.4 16,351 + OKGIIK_00070 0.42 -0.3 16,351 + OKGIIK_00070 0.42 -0.0 16,351 + OKGIIK_00070 0.42 -1.6 16,351 + OKGIIK_00070 0.42 +0.4 16,352 - OKGIIK_00070 0.42 +0.2 16,352 - OKGIIK_00070 0.42 +0.4 16,352 - OKGIIK_00070 0.42 +0.6 16,352 - OKGIIK_00070 0.42 +0.5 16,352 - OKGIIK_00070 0.42 +0.1 16,352 - OKGIIK_00070 0.42 -2.0 16,352 - OKGIIK_00070 0.42 -2.5 16,352 - OKGIIK_00070 0.42 +0.4 16,352 - OKGIIK_00070 0.42 +0.3 16,483 + OKGIIK_00070 0.49 -0.8 16,483 + OKGIIK_00070 0.49 -0.9 16,483 + OKGIIK_00070 0.49 -0.8 16,483 + OKGIIK_00070 0.49 -0.6 16,483 + OKGIIK_00070 0.49 +1.4 16,483 + OKGIIK_00070 0.49 -0.9 16,483 + OKGIIK_00070 0.49 +0.0 16,483 + OKGIIK_00070 0.49 -0.4 16,483 + OKGIIK_00070 0.49 -0.4 16,483 + OKGIIK_00070 0.49 -1.2 16,483 + OKGIIK_00070 0.49 +0.2 16,483 + OKGIIK_00070 0.49 +0.4 16,483 + OKGIIK_00070 0.49 -1.1 16,483 + OKGIIK_00070 0.49 -0.9 16,483 + OKGIIK_00070 0.49 +0.9 16,483 + OKGIIK_00070 0.49 +0.9 16,483 + OKGIIK_00070 0.49 -0.6 16,483 + OKGIIK_00070 0.49 -1.7 16,483 + OKGIIK_00070 0.49 +0.2 16,484 - OKGIIK_00070 0.49 +0.1 16,484 - OKGIIK_00070 0.49 +0.8 16,484 - OKGIIK_00070 0.49 +0.4 16,484 - OKGIIK_00070 0.49 -0.5 16,484 - OKGIIK_00070 0.49 -1.2 16,484 - OKGIIK_00070 0.49 -1.9 16,484 - OKGIIK_00070 0.49 -0.6 16,484 - OKGIIK_00070 0.49 -2.0 16,484 - OKGIIK_00070 0.49 -0.6 16,484 - OKGIIK_00070 0.49 -0.8 16,484 - OKGIIK_00070 0.49 +1.9 16,484 - OKGIIK_00070 0.49 -1.2 16,484 - OKGIIK_00070 0.49 -0.2 16,484 - OKGIIK_00070 0.49 +0.4 16,484 - OKGIIK_00070 0.49 -1.4 16,484 - OKGIIK_00070 0.49 +1.2 16,484 - OKGIIK_00070 0.49 -0.1 16,484 - OKGIIK_00070 0.49 -1.6 16,594 + OKGIIK_00070 0.56 -0.4 16,594 + OKGIIK_00070 0.56 +0.2 16,595 - OKGIIK_00070 0.56 -1.6 16,595 - OKGIIK_00070 0.56 -2.0 16,595 - OKGIIK_00070 0.56 -0.6
Or see this region's nucleotide sequence