Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040 at 16.400 kb on - strand, within LU632_RS26040 at 16.471 kb on + strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.484 kb on + strand, within LU632_RS26040 at 16.526 kb on + strand, within LU632_RS26040 at 16.576 kb on + strand, within LU632_RS26040 at 16.577 kb on - strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.623 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS) remove 14,296 - -0.5 14,309 + +1.6 14,309 + +1.5 14,310 - +1.6 14,320 + +0.6 14,320 + -0.9 14,320 + +1.4 14,320 + +1.3 14,321 - +1.6 14,371 + +1.2 14,371 + +0.0 14,371 + -0.7 14,372 - +1.7 14,372 - -1.8 14,379 + +0.8 14,380 - +1.3 14,412 - LU632_RS26030 0.11 -0.3 14,456 + LU632_RS26030 0.16 -0.2 14,459 + LU632_RS26030 0.16 -1.6 14,460 - LU632_RS26030 0.16 -3.1 14,460 - LU632_RS26030 0.16 +1.4 14,461 + LU632_RS26030 0.16 -1.2 14,502 - LU632_RS26030 0.21 +1.4 14,510 + LU632_RS26030 0.22 +2.4 14,510 + LU632_RS26030 0.22 +1.6 14,561 + LU632_RS26030 0.27 +1.5 14,672 - LU632_RS26030 0.38 +2.0 14,820 - LU632_RS26030 0.54 -0.6 14,842 + LU632_RS26030 0.56 +1.2 14,842 + LU632_RS26030 0.56 -1.4 14,843 - LU632_RS26030 0.56 +0.7 14,843 - LU632_RS26030 0.56 -1.4 14,843 - LU632_RS26030 0.56 +2.9 14,843 - LU632_RS26030 0.56 -2.3 14,869 + LU632_RS26030 0.59 +1.1 14,870 - LU632_RS26030 0.59 +1.1 14,890 + LU632_RS26030 0.61 -1.4 14,890 + LU632_RS26030 0.61 +0.6 14,890 + LU632_RS26030 0.61 +1.8 14,891 - LU632_RS26030 0.61 +1.0 14,905 - LU632_RS26030 0.63 +0.9 14,944 - LU632_RS26030 0.67 +0.7 15,000 - LU632_RS26030 0.73 +0.5 15,035 + LU632_RS26030 0.76 +1.4 15,036 - LU632_RS26030 0.76 -0.2 15,096 - LU632_RS26030 0.83 -0.2 15,105 + LU632_RS26030 0.84 -1.9 15,106 - LU632_RS26030 0.84 +3.0 15,106 - LU632_RS26030 0.84 -2.1 15,119 + LU632_RS26030 0.85 +0.8 15,180 + +1.9 15,180 + +1.1 15,180 + -0.4 15,180 + +0.3 15,180 + +1.1 15,181 - +1.7 15,181 - +0.2 15,181 - +0.6 15,202 - -1.9 15,279 + -0.2 15,279 + +0.7 15,280 - -0.8 15,280 - -1.7 15,288 + -1.6 15,328 + LU632_RS26035 0.10 +1.0 15,328 + LU632_RS26035 0.10 -0.2 15,329 - LU632_RS26035 0.11 +0.8 15,398 - LU632_RS26035 0.25 +0.4 15,416 + LU632_RS26035 0.29 -0.3 15,426 + LU632_RS26035 0.31 +1.4 15,426 + LU632_RS26035 0.31 +1.7 15,427 - LU632_RS26035 0.31 +0.7 15,427 - LU632_RS26035 0.31 -0.2 15,427 - LU632_RS26035 0.31 +1.1 15,475 + LU632_RS26035 0.41 +2.9 15,476 - LU632_RS26035 0.41 +1.0 15,491 + LU632_RS26035 0.44 +2.6 15,491 + LU632_RS26035 0.44 +1.8 15,491 + LU632_RS26035 0.44 +0.5 15,491 + LU632_RS26035 0.44 +4.1 15,491 + LU632_RS26035 0.44 -0.7 15,491 + LU632_RS26035 0.44 +1.5 15,492 - LU632_RS26035 0.44 -0.3 15,492 - LU632_RS26035 0.44 -3.1 15,492 - LU632_RS26035 0.44 +1.3 15,492 - LU632_RS26035 0.44 -0.4 15,492 - LU632_RS26035 0.44 -0.3 15,492 - LU632_RS26035 0.44 +0.9 15,573 + LU632_RS26035 0.61 +0.7 15,573 + LU632_RS26035 0.61 -1.4 15,574 - LU632_RS26035 0.61 +0.6 15,574 - LU632_RS26035 0.61 -0.6 15,574 - LU632_RS26035 0.61 +1.9 15,574 - LU632_RS26035 0.61 -1.5 15,574 - LU632_RS26035 0.61 +0.4 15,645 + LU632_RS26035 0.76 +1.6 15,661 + LU632_RS26035 0.79 +1.2 15,661 + LU632_RS26035 0.79 +0.3 15,661 + LU632_RS26035 0.79 -2.1 15,712 + +1.1 15,712 + +3.8 15,712 + -0.8 15,712 + -0.0 15,713 - +1.2 15,713 - -1.2 15,761 + +0.6 15,761 + +1.5 15,761 + +1.1 15,761 + +0.9 15,761 + +0.6 15,761 + +2.6 15,761 + -2.5 15,762 - +1.1 15,762 - +0.4 15,817 + -1.4 15,899 + +1.1 15,900 - -2.1 16,017 + LU632_RS26040 0.19 -1.8 16,072 + LU632_RS26040 0.23 +0.8 16,072 + LU632_RS26040 0.23 +2.7 16,109 + LU632_RS26040 0.26 -1.4 16,110 - LU632_RS26040 0.26 +2.1 16,110 - LU632_RS26040 0.26 -0.2 16,110 - LU632_RS26040 0.26 +0.1 16,110 - LU632_RS26040 0.26 -0.4 16,153 - LU632_RS26040 0.30 -0.3 16,230 - LU632_RS26040 0.36 -0.9 16,249 + LU632_RS26040 0.37 +2.8 16,400 - LU632_RS26040 0.49 +0.3 16,471 + LU632_RS26040 0.55 +1.8 16,472 - LU632_RS26040 0.55 +0.3 16,472 - LU632_RS26040 0.55 +0.8 16,484 + LU632_RS26040 0.56 -2.6 16,526 + LU632_RS26040 0.59 +2.4 16,576 + LU632_RS26040 0.63 -0.9 16,577 - LU632_RS26040 0.63 -2.3 16,585 + LU632_RS26040 0.64 +1.3 16,585 + LU632_RS26040 0.64 +0.9 16,585 + LU632_RS26040 0.64 -2.1 16,585 + LU632_RS26040 0.64 +2.0 16,585 + LU632_RS26040 0.64 -0.4 16,623 + LU632_RS26040 0.67 -1.6 16,711 + LU632_RS26040 0.74 +1.6 16,711 + LU632_RS26040 0.74 +1.7 16,712 - LU632_RS26040 0.74 -2.2 16,712 - LU632_RS26040 0.74 -3.2
Or see this region's nucleotide sequence