Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25330

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25330 and LU632_RS25335 overlap by 59 nucleotides LU632_RS25330: LU632_RS25330 - DUF5710 domain-containing protein, at 214 to 840 _RS25330 LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604 _RS25335 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.045 kb on + strandat 0.072 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.213 kb on + strandat 0.226 kb on - strandat 0.226 kb on - strandat 0.230 kb on - strandat 0.238 kb on - strandat 0.238 kb on - strandat 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.310 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.598 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.809 kb on + strandat 0.810 kb on - strandat 0.857 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.883 kb on - strandat 0.883 kb on - strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 1.032 kb on - strandat 1.050 kb on + strandat 1.051 kb on - strandat 1.256 kb on + strand, within LU632_RS25335at 1.257 kb on - strand, within LU632_RS25335at 1.334 kb on - strand, within LU632_RS25335at 1.420 kb on + strand, within LU632_RS25335at 1.517 kb on - strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.716 kb on + strand, within LU632_RS25335

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
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45 + -0.2
72 + -0.1
209 + -0.4
209 + -0.7
209 + -0.0
210 - +0.2
210 - +0.5
210 - -0.5
213 + -0.6
226 - +0.2
226 - +1.2
230 - -0.3
238 - +0.8
238 - -1.1
298 + LU632_RS25330 0.13 +1.0
298 + LU632_RS25330 0.13 -0.4
298 + LU632_RS25330 0.13 -1.4
298 + LU632_RS25330 0.13 +0.2
299 - LU632_RS25330 0.14 -1.5
299 - LU632_RS25330 0.14 +0.7
299 - LU632_RS25330 0.14 -0.4
299 - LU632_RS25330 0.14 -0.5
299 - LU632_RS25330 0.14 +0.1
299 - LU632_RS25330 0.14 +0.7
310 + LU632_RS25330 0.15 +0.1
560 + LU632_RS25330 0.55 -0.2
560 + LU632_RS25330 0.55 +0.4
560 + LU632_RS25330 0.55 +1.8
560 + LU632_RS25330 0.55 -2.7
561 - LU632_RS25330 0.55 +0.4
561 - LU632_RS25330 0.55 -0.5
561 - LU632_RS25330 0.55 -0.3
562 + LU632_RS25330 0.56 -1.2
562 + LU632_RS25330 0.56 -2.1
598 + LU632_RS25330 0.61 +0.3
658 + LU632_RS25330 0.71 +0.1
658 + LU632_RS25330 0.71 -0.0
658 + LU632_RS25330 0.71 +0.4
659 - LU632_RS25330 0.71 +0.5
659 - LU632_RS25330 0.71 +0.1
659 - LU632_RS25330 0.71 -1.0
722 + LU632_RS25330 0.81 -0.1
722 + LU632_RS25330 0.81 -0.3
723 - LU632_RS25330 0.81 +0.7
723 - LU632_RS25330 0.81 +0.5
723 - LU632_RS25330 0.81 +0.7
809 + -0.3
810 - -0.8
857 - +0.4
861 - -0.2
861 - +0.2
861 - +0.4
883 - +0.3
883 - -0.1
887 - +0.1
887 - -0.9
917 + -0.4
917 + +0.0
918 - +1.9
918 - -1.0
1,032 - +1.2
1,050 + -0.4
1,051 - -1.5
1,256 + LU632_RS25335 0.17 -0.4
1,257 - LU632_RS25335 0.17 +0.4
1,334 - LU632_RS25335 0.20 -1.1
1,420 + LU632_RS25335 0.23 +0.4
1,517 - LU632_RS25335 0.26 -1.5
1,546 + LU632_RS25335 0.27 +0.8
1,546 + LU632_RS25335 0.27 +0.7
1,547 - LU632_RS25335 0.27 -0.4
1,547 - LU632_RS25335 0.27 +2.5
1,549 - LU632_RS25335 0.27 -0.1
1,549 - LU632_RS25335 0.27 +0.6
1,549 - LU632_RS25335 0.27 -0.8
1,668 + LU632_RS25335 0.31 +0.1
1,668 + LU632_RS25335 0.31 +2.2
1,668 + LU632_RS25335 0.31 +1.7
1,668 + LU632_RS25335 0.31 +1.2
1,668 + LU632_RS25335 0.31 +1.6
1,669 - LU632_RS25335 0.31 -0.4
1,669 - LU632_RS25335 0.31 -2.8
1,669 - LU632_RS25335 0.31 -3.2
1,669 - LU632_RS25335 0.31 -1.8
1,716 + LU632_RS25335 0.33 -0.9

Or see this region's nucleotide sequence