Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22955 and feoA are separated by 146 nucleotides feoA and feoB are separated by 13 nucleotides
LU632_RS22955: LU632_RS22955 - RNA-binding transcriptional accessory protein, at 4,372,477 to 4,374,795
_RS22955
LU632_RS22960: feoA - ferrous iron transporter A, at 4,374,942 to 4,375,166
feoA
LU632_RS22965: feoB - Fe(2+) transporter permease subunit FeoB, at 4,375,180 to 4,377,480
feoB
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.142 kb on - strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.510 kb on - strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.553 kb on - strand, within LU632_RS22955 at 4374.843 kb on + strand at 4374.868 kb on + strand at 4374.937 kb on + strand at 4374.938 kb on - strand at 4374.938 kb on - strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.950 kb on + strand at 4374.951 kb on - strand at 4374.963 kb on + strand at 4374.963 kb on + strand at 4374.967 kb on - strand, within feoA at 4375.177 kb on - strand at 4375.177 kb on - strand at 4375.179 kb on + strand at 4375.179 kb on + strand at 4375.203 kb on - strand at 4375.299 kb on + strand at 4375.360 kb on + strand at 4375.407 kb on + strand at 4375.422 kb on - strand, within feoB at 4375.480 kb on - strand, within feoB at 4375.486 kb on + strand, within feoB at 4375.539 kb on + strand, within feoB at 4375.540 kb on - strand, within feoB at 4375.566 kb on + strand, within feoB at 4375.567 kb on - strand, within feoB at 4375.614 kb on + strand, within feoB at 4375.925 kb on + strand, within feoB at 4375.926 kb on - strand, within feoB at 4376.038 kb on + strand, within feoB at 4376.039 kb on - strand, within feoB at 4376.039 kb on - strand, within feoB at 4376.042 kb on + strand, within feoB at 4376.043 kb on - strand, within feoB at 4376.062 kb on - strand, within feoB
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS) remove 4,374,034 - LU632_RS22955 0.67 -0.0 4,374,034 - LU632_RS22955 0.67 +1.6 4,374,034 - LU632_RS22955 0.67 +0.2 4,374,142 - LU632_RS22955 0.72 -1.7 4,374,144 + LU632_RS22955 0.72 +1.2 4,374,144 + LU632_RS22955 0.72 -0.6 4,374,459 - LU632_RS22955 0.85 +0.9 4,374,459 - LU632_RS22955 0.85 +0.3 4,374,510 - LU632_RS22955 0.88 +1.2 4,374,513 + LU632_RS22955 0.88 -0.8 4,374,513 + LU632_RS22955 0.88 -1.3 4,374,514 - LU632_RS22955 0.88 -0.8 4,374,514 - LU632_RS22955 0.88 -0.9 4,374,553 - LU632_RS22955 0.90 -0.2 4,374,843 + -0.1 4,374,868 + +0.3 4,374,937 + +0.4 4,374,938 - +4.8 4,374,938 - +0.2 4,374,941 + -0.1 4,374,941 + -0.3 4,374,941 + -1.1 4,374,950 + -0.4 4,374,951 - +0.4 4,374,963 + +1.0 4,374,963 + -0.9 4,374,967 - feoA LU632_RS22960 0.11 -3.1 4,375,177 - +0.2 4,375,177 - +0.1 4,375,179 + +0.6 4,375,179 + +0.4 4,375,203 - +0.2 4,375,299 + +1.6 4,375,360 + +0.2 4,375,407 + -2.8 4,375,422 - feoB LU632_RS22965 0.11 -0.1 4,375,480 - feoB LU632_RS22965 0.13 +1.4 4,375,486 + feoB LU632_RS22965 0.13 -2.9 4,375,539 + feoB LU632_RS22965 0.16 -0.2 4,375,540 - feoB LU632_RS22965 0.16 -1.9 4,375,566 + feoB LU632_RS22965 0.17 -0.2 4,375,567 - feoB LU632_RS22965 0.17 +0.2 4,375,614 + feoB LU632_RS22965 0.19 +2.5 4,375,925 + feoB LU632_RS22965 0.32 +0.4 4,375,926 - feoB LU632_RS22965 0.32 -1.2 4,376,038 + feoB LU632_RS22965 0.37 -0.9 4,376,039 - feoB LU632_RS22965 0.37 -2.5 4,376,039 - feoB LU632_RS22965 0.37 +0.6 4,376,042 + feoB LU632_RS22965 0.37 +2.8 4,376,043 - feoB LU632_RS22965 0.38 -0.2 4,376,062 - feoB LU632_RS22965 0.38 -0.3
Or see this region's nucleotide sequence