Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22440 and aroE overlap by 4 nucleotides aroE and tsaC are separated by 5 nucleotides tsaC and LU632_RS22455 overlap by 8 nucleotides LU632_RS22455 and smg are separated by 27 nucleotides
LU632_RS22440: LU632_RS22440 - DUF1488 domain-containing protein, at 4,289,812 to 4,290,063
_RS22440
LU632_RS22445: aroE - shikimate dehydrogenase, at 4,290,060 to 4,290,881
aroE
LU632_RS22450: tsaC - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 4,290,887 to 4,291,459
tsaC
LU632_RS22455: LU632_RS22455 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 4,291,452 to 4,292,006
_RS22455
LU632_RS22460: smg - DUF494 family protein Smg, at 4,292,034 to 4,292,507
smg
Position (kb) 4290
4291
4292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4289.923 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.947 kb on - strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4290.178 kb on - strand, within aroE at 4290.263 kb on - strand, within aroE at 4290.266 kb on + strand, within aroE at 4290.270 kb on + strand, within aroE at 4290.437 kb on + strand, within aroE at 4290.438 kb on - strand, within aroE at 4290.475 kb on - strand, within aroE at 4290.620 kb on + strand, within aroE at 4290.686 kb on + strand, within aroE at 4290.728 kb on + strand, within aroE at 4290.822 kb on + strand at 4290.822 kb on + strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.825 kb on - strand at 4291.755 kb on - strand, within LU632_RS22455 at 4291.755 kb on - strand, within LU632_RS22455 at 4291.820 kb on - strand, within LU632_RS22455 at 4291.880 kb on - strand, within LU632_RS22455 at 4292.006 kb on + strand at 4292.008 kb on + strand at 4292.008 kb on + strand at 4292.009 kb on - strand at 4292.009 kb on - strand at 4292.013 kb on + strand at 4292.013 kb on + strand at 4292.013 kb on + strand at 4292.014 kb on - strand at 4292.014 kb on - strand at 4292.140 kb on - strand, within smg at 4292.265 kb on + strand, within smg at 4292.265 kb on + strand, within smg at 4292.266 kb on - strand, within smg at 4292.266 kb on - strand, within smg at 4292.291 kb on - strand, within smg at 4292.294 kb on + strand, within smg at 4292.295 kb on - strand, within smg at 4292.387 kb on - strand, within smg at 4292.430 kb on + strand, within smg at 4292.435 kb on + strand, within smg
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS) remove 4,289,923 - LU632_RS22440 0.44 +2.3 4,289,945 - LU632_RS22440 0.53 +1.8 4,289,945 - LU632_RS22440 0.53 +0.1 4,289,947 - LU632_RS22440 0.54 +0.1 4,289,961 + LU632_RS22440 0.59 +0.0 4,289,961 + LU632_RS22440 0.59 +0.4 4,290,178 - aroE LU632_RS22445 0.14 -1.3 4,290,263 - aroE LU632_RS22445 0.25 -1.4 4,290,266 + aroE LU632_RS22445 0.25 +0.4 4,290,270 + aroE LU632_RS22445 0.26 -0.4 4,290,437 + aroE LU632_RS22445 0.46 -0.3 4,290,438 - aroE LU632_RS22445 0.46 -2.3 4,290,475 - aroE LU632_RS22445 0.50 -2.2 4,290,620 + aroE LU632_RS22445 0.68 -0.0 4,290,686 + aroE LU632_RS22445 0.76 -2.0 4,290,728 + aroE LU632_RS22445 0.81 -0.4 4,290,822 + -0.1 4,290,822 + -0.4 4,290,823 - -0.4 4,290,823 - -2.7 4,290,823 - -2.8 4,290,825 - +1.2 4,291,755 - LU632_RS22455 0.55 +3.2 4,291,755 - LU632_RS22455 0.55 +0.6 4,291,820 - LU632_RS22455 0.66 -0.5 4,291,880 - LU632_RS22455 0.77 +1.2 4,292,006 + -0.7 4,292,008 + +1.6 4,292,008 + -0.4 4,292,009 - -1.1 4,292,009 - -2.8 4,292,013 + -0.6 4,292,013 + -0.6 4,292,013 + +0.6 4,292,014 - +0.9 4,292,014 - +0.2 4,292,140 - smg LU632_RS22460 0.22 -0.6 4,292,265 + smg LU632_RS22460 0.49 -1.3 4,292,265 + smg LU632_RS22460 0.49 +0.6 4,292,266 - smg LU632_RS22460 0.49 -1.9 4,292,266 - smg LU632_RS22460 0.49 -0.3 4,292,291 - smg LU632_RS22460 0.54 -0.3 4,292,294 + smg LU632_RS22460 0.55 -0.4 4,292,295 - smg LU632_RS22460 0.55 +0.7 4,292,387 - smg LU632_RS22460 0.74 -2.2 4,292,430 + smg LU632_RS22460 0.84 +2.0 4,292,435 + smg LU632_RS22460 0.85 +0.5
Or see this region's nucleotide sequence