Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21915

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
4,185,003	+				+1.5
4,185,038	+		LU632_RS21910	0.11	+0.5
4,185,065	-		LU632_RS21910	0.14	+0.4
4,185,083	+		LU632_RS21910	0.16	+1.3
4,185,224	-		LU632_RS21910	0.31	+0.5
4,185,224	-		LU632_RS21910	0.31	+1.1
4,185,242	-		LU632_RS21910	0.33	-0.5
4,185,242	-		LU632_RS21910	0.33	+1.1
4,185,255	-		LU632_RS21910	0.35	+0.7
4,185,360	+		LU632_RS21910	0.46	-0.7
4,185,360	+		LU632_RS21910	0.46	+0.3
4,185,360	+		LU632_RS21910	0.46	-0.6
4,185,360	+		LU632_RS21910	0.46	-1.5
4,185,360	+		LU632_RS21910	0.46	-2.8
4,185,361	-		LU632_RS21910	0.46	+0.8
4,185,361	-		LU632_RS21910	0.46	+1.3
4,185,361	-		LU632_RS21910	0.46	+0.4
4,185,364	+		LU632_RS21910	0.47	-1.2
4,185,365	-		LU632_RS21910	0.47	-0.2
4,185,433	+		LU632_RS21910	0.54	+0.3
4,185,474	+		LU632_RS21910	0.59	+0.7
4,185,618	-		LU632_RS21910	0.75	-1.2
4,185,687	+		LU632_RS21910	0.82	+3.2
4,185,688	-		LU632_RS21910	0.82	+0.6
4,185,754	+		LU632_RS21910	0.89	-0.9
4,185,786	+				+0.8
4,185,786	+				+1.4
4,185,787	-				-0.6
4,185,799	+				+0.3
4,185,817	+				+0.2
4,185,907	+				-0.1
4,186,454	+	rfaD	LU632_RS21915	0.52	+0.2
4,186,836	+				-0.4
4,186,901	-				-1.5
4,187,171	-	rfaF	LU632_RS21920	0.24	-1.9
4,187,776	+	rfaF	LU632_RS21920	0.81	-1.5
4,187,777	-	rfaF	LU632_RS21920	0.81	+0.6