Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21905

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
4,182,719	+				+0.4
4,182,720	-				+1.2
4,182,738	+				+0.6
4,182,765	-				-2.3
4,182,769	-				-0.6
4,182,769	-				+0.4
4,182,769	-				-1.8
4,182,852	-		LU632_RS21900	0.14	-1.9
4,182,882	-		LU632_RS21900	0.17	-1.7
4,182,884	+		LU632_RS21900	0.17	-1.2
4,182,898	+		LU632_RS21900	0.19	+1.6
4,183,029	-		LU632_RS21900	0.33	-1.4
4,183,146	-		LU632_RS21900	0.45	-0.4
4,183,176	+		LU632_RS21900	0.48	-1.2
4,183,177	-		LU632_RS21900	0.48	+0.0
4,183,183	-		LU632_RS21900	0.49	-0.1
4,183,359	+		LU632_RS21900	0.68	-2.6
4,183,359	+		LU632_RS21900	0.68	-1.0
4,183,360	-		LU632_RS21900	0.68	+0.6
4,183,360	-		LU632_RS21900	0.68	-1.0
4,183,373	+		LU632_RS21900	0.69	-1.6
4,183,385	+		LU632_RS21900	0.71	-0.8
4,183,386	-		LU632_RS21900	0.71	-0.5
4,183,386	-		LU632_RS21900	0.71	-0.5
4,183,404	+		LU632_RS21900	0.73	+0.6
4,183,405	-		LU632_RS21900	0.73	-1.4
4,183,408	-		LU632_RS21900	0.73	-1.4
4,183,534	-		LU632_RS21900	0.87	-1.1
4,183,579	-				-1.0
4,183,667	+				-1.2
4,183,667	+				-0.2
4,183,667	+				-0.6
4,183,672	+				+1.2
4,183,688	+				-0.4
4,183,689	-				-0.8
4,183,691	-				-0.9
4,183,691	-				-0.1
4,183,691	-				+4.5
4,183,709	+				-0.2
4,183,710	-				+0.0
4,183,776	+				+1.6
4,183,776	+				-0.3
4,183,776	+				-0.2
4,183,776	+				-1.3
4,183,777	-				-1.2
4,183,777	-				-1.1
4,183,777	-				+0.4
4,183,777	-				-2.1
4,183,777	-				-0.8
4,183,777	-				-0.0
4,183,779	+				-1.0
4,183,779	+				+0.3
4,183,779	+				-0.7
4,183,779	+				+1.1
4,183,779	+				-1.0
4,183,780	-				-0.4
4,183,843	-		LU632_RS21905	0.11	+0.9
4,183,843	-		LU632_RS21905	0.11	-0.8
4,183,843	-		LU632_RS21905	0.11	+0.2
4,183,843	-		LU632_RS21905	0.11	+1.8
4,183,847	-		LU632_RS21905	0.12	+0.4
4,183,869	+		LU632_RS21905	0.13	+1.6
4,183,869	+		LU632_RS21905	0.13	-0.2
4,183,897	-		LU632_RS21905	0.16	+0.8
4,183,951	-		LU632_RS21905	0.20	+0.5
4,183,999	+		LU632_RS21905	0.25	-1.3
4,184,093	+		LU632_RS21905	0.33	+0.6
4,184,093	+		LU632_RS21905	0.33	+1.5
4,184,093	+		LU632_RS21905	0.33	-0.4
4,184,093	+		LU632_RS21905	0.33	+1.1
4,184,093	+		LU632_RS21905	0.33	+0.6
4,184,093	+		LU632_RS21905	0.33	-1.4
4,184,093	+		LU632_RS21905	0.33	-1.1
4,184,093	+		LU632_RS21905	0.33	-2.4
4,184,094	-		LU632_RS21905	0.33	+1.5
4,184,094	-		LU632_RS21905	0.33	-1.0
4,184,094	-		LU632_RS21905	0.33	-0.0
4,184,094	-		LU632_RS21905	0.33	-1.6
4,184,094	-		LU632_RS21905	0.33	+0.7
4,184,094	-		LU632_RS21905	0.33	+1.3
4,184,094	-		LU632_RS21905	0.33	+0.4
4,184,094	-		LU632_RS21905	0.33	+0.1
4,184,094	-		LU632_RS21905	0.33	+1.9
4,184,095	+		LU632_RS21905	0.33	+0.6
4,184,095	+		LU632_RS21905	0.33	-0.8
4,184,096	-		LU632_RS21905	0.33	+0.1
4,184,116	+		LU632_RS21905	0.34	-0.6
4,184,130	-		LU632_RS21905	0.36	-0.3
4,184,164	-		LU632_RS21905	0.39	+0.2
4,184,269	-		LU632_RS21905	0.47	-1.1
4,184,343	+		LU632_RS21905	0.54	-1.0
4,184,368	-		LU632_RS21905	0.56	+0.6
4,184,439	-		LU632_RS21905	0.62	+0.4
4,184,439	-		LU632_RS21905	0.62	+0.2
4,184,531	-		LU632_RS21905	0.70	+2.2
4,184,533	-		LU632_RS21905	0.70	-1.0
4,184,572	+		LU632_RS21905	0.73	-0.0
4,184,869	-				+0.8
4,184,883	+				-1.3
4,184,883	+				-0.7
4,184,883	+				-2.6
4,184,884	-				-0.0
4,184,923	-				+0.7
4,184,923	-				-0.6
4,184,923	-				-0.7
4,184,923	-				+0.6
4,184,923	-				-1.0
4,184,923	-				-0.4
4,184,943	+				-0.6
4,185,003	+				+1.5
4,185,038	+		LU632_RS21910	0.11	+0.5
4,185,065	-		LU632_RS21910	0.14	+0.4
4,185,083	+		LU632_RS21910	0.16	+1.3
4,185,224	-		LU632_RS21910	0.31	+0.5
4,185,224	-		LU632_RS21910	0.31	+1.1
4,185,242	-		LU632_RS21910	0.33	-0.5
4,185,242	-		LU632_RS21910	0.33	+1.1
4,185,255	-		LU632_RS21910	0.35	+0.7
4,185,360	+		LU632_RS21910	0.46	-0.7
4,185,360	+		LU632_RS21910	0.46	+0.3
4,185,360	+		LU632_RS21910	0.46	-0.6
4,185,360	+		LU632_RS21910	0.46	-1.5
4,185,360	+		LU632_RS21910	0.46	-2.8
4,185,361	-		LU632_RS21910	0.46	+0.8
4,185,361	-		LU632_RS21910	0.46	+1.3
4,185,361	-		LU632_RS21910	0.46	+0.4
4,185,364	+		LU632_RS21910	0.47	-1.2
4,185,365	-		LU632_RS21910	0.47	-0.2
4,185,433	+		LU632_RS21910	0.54	+0.3
4,185,474	+		LU632_RS21910	0.59	+0.7
4,185,618	-		LU632_RS21910	0.75	-1.2
4,185,687	+		LU632_RS21910	0.82	+3.2
4,185,688	-		LU632_RS21910	0.82	+0.6
4,185,754	+		LU632_RS21910	0.89	-0.9
4,185,786	+				+0.8
4,185,786	+				+1.4
4,185,787	-				-0.6
4,185,799	+				+0.3
4,185,817	+				+0.2