Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21285

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
4,063,530	-				-3.6
4,063,592	+				+0.3
4,063,605	-				-0.2
4,063,616	+				-0.2
4,063,663	+	hpf	LU632_RS21285	0.20	+0.7
4,063,716	+	hpf	LU632_RS21285	0.39	+0.2
4,063,716	+	hpf	LU632_RS21285	0.39	+0.2
4,063,716	+	hpf	LU632_RS21285	0.39	+2.5
4,063,716	+	hpf	LU632_RS21285	0.39	-0.7
4,063,716	+	hpf	LU632_RS21285	0.39	-0.4
4,063,716	+	hpf	LU632_RS21285	0.39	+0.2
4,063,717	-	hpf	LU632_RS21285	0.39	+1.1
4,063,815	+	hpf	LU632_RS21285	0.73	+1.4
4,063,815	+	hpf	LU632_RS21285	0.73	-0.1
4,063,815	+	hpf	LU632_RS21285	0.73	+0.0
4,063,815	+	hpf	LU632_RS21285	0.73	-1.0
4,063,816	-	hpf	LU632_RS21285	0.73	+2.3
4,063,816	-	hpf	LU632_RS21285	0.73	-0.3
4,063,816	-	hpf	LU632_RS21285	0.73	-1.2
4,063,869	-				-2.2
4,063,890	+				-0.3
4,063,933	+				+0.6
4,063,933	+				+0.8
4,063,949	+				-0.2
4,064,033	+				-0.2
4,064,452	-	ptsN	LU632_RS21290	0.74	-0.2
4,064,452	-	ptsN	LU632_RS21290	0.74	+0.6
4,064,591	-				-0.2
4,064,613	+				+2.1
4,064,613	+				-2.0
4,064,615	+				+3.7
4,064,615	+				+0.1
4,064,615	+				-0.1
4,064,615	+				-0.7
4,064,616	-				-0.5
4,064,639	+				-0.4
4,064,640	-				+0.7
4,064,799	+				+0.7
4,064,800	+				+1.1
4,064,800	-				-0.8
4,064,834	-				-1.8
4,064,858	-				-1.6