Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17810

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
3,353,700	-				+0.0
3,353,778	-				-0.4
3,353,778	-				+2.3
3,353,820	-	rodZ	LU632_RS17805	0.12	-0.6
3,353,932	-	rodZ	LU632_RS17805	0.23	-0.9
3,354,890	-	pilW	LU632_RS17810	0.27	-0.5
3,355,136	-	pilW	LU632_RS17810	0.60	-0.2
3,355,143	-	pilW	LU632_RS17810	0.61	-0.3
3,355,143	-	pilW	LU632_RS17810	0.61	-0.5
3,355,143	-	pilW	LU632_RS17810	0.61	+0.2
3,355,182	+	pilW	LU632_RS17810	0.66	+0.2
3,355,182	+	pilW	LU632_RS17810	0.66	-0.2
3,355,183	-	pilW	LU632_RS17810	0.67	-3.3
3,355,242	+	pilW	LU632_RS17810	0.75	+0.4
3,355,243	-	pilW	LU632_RS17810	0.75	-0.5
3,355,243	-	pilW	LU632_RS17810	0.75	-1.2
3,355,324	-	pilW	LU632_RS17810	0.86	-0.3
3,355,617	-				-0.6
3,355,635	-		LU632_RS17815	0.10	+0.5
3,355,643	+		LU632_RS17815	0.11	-0.1
3,355,644	-		LU632_RS17815	0.11	-1.5
3,355,647	-		LU632_RS17815	0.11	-1.3
3,355,649	+		LU632_RS17815	0.12	-1.0
3,355,831	+		LU632_RS17815	0.27	+1.2
3,355,907	+		LU632_RS17815	0.34	+0.4
3,355,925	+		LU632_RS17815	0.35	+0.3
3,355,925	+		LU632_RS17815	0.35	-2.4
3,355,926	-		LU632_RS17815	0.35	+0.3
3,355,944	+		LU632_RS17815	0.37	+2.0
3,355,944	+		LU632_RS17815	0.37	-0.6
3,355,945	-		LU632_RS17815	0.37	-0.1
3,355,945	-		LU632_RS17815	0.37	-3.5
3,355,966	-		LU632_RS17815	0.39	-0.7
3,356,118	+		LU632_RS17815	0.52	-1.8
3,356,119	-		LU632_RS17815	0.52	-1.2
3,356,344	+		LU632_RS17815	0.71	-0.7
3,356,345	-		LU632_RS17815	0.71	-0.1
3,356,345	-		LU632_RS17815	0.71	-0.4
3,356,378	+		LU632_RS17815	0.74	-0.3
3,356,379	-		LU632_RS17815	0.74	-0.9
3,356,387	+		LU632_RS17815	0.74	-0.8
3,356,388	-		LU632_RS17815	0.74	-1.1