Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16485

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
3,119,075	+		LU632_RS16480	0.23	-1.5
3,119,075	+		LU632_RS16480	0.23	-2.1
3,119,076	-		LU632_RS16480	0.23	+1.6
3,119,118	-		LU632_RS16480	0.28	-2.3
3,119,126	+		LU632_RS16480	0.28	-3.0
3,119,198	+		LU632_RS16480	0.36	-3.7
3,119,199	-		LU632_RS16480	0.37	-2.1
3,119,207	+		LU632_RS16480	0.37	+0.9
3,119,237	+		LU632_RS16480	0.41	-0.7
3,119,260	+		LU632_RS16480	0.43	-1.1
3,119,261	-		LU632_RS16480	0.44	-2.8
3,119,510	+		LU632_RS16480	0.71	-1.0
3,119,636	+		LU632_RS16480	0.85	-4.8
3,119,636	+		LU632_RS16480	0.85	-2.8
3,119,637	-		LU632_RS16480	0.86	-2.2
3,119,679	+				-1.7
3,119,742	+				+0.9
3,119,742	+				-0.5
3,119,816	-				-0.8
3,119,856	-				+0.2
3,119,914	+				-0.1
3,119,919	+				-1.4
3,119,919	+				+0.3
3,119,920	-				-0.7
3,119,922	+				-2.5
3,119,922	+				-2.2
3,119,922	+				-3.4
3,119,923	-				-0.6
3,119,923	-				-1.3
3,119,923	-				-2.0
3,120,095	-	arnA	LU632_RS16485	0.17	-1.1
3,120,357	+	arnA	LU632_RS16485	0.30	-1.1
3,120,358	-	arnA	LU632_RS16485	0.30	-1.6
3,120,373	+	arnA	LU632_RS16485	0.31	-1.3
3,120,373	+	arnA	LU632_RS16485	0.31	-2.5
3,120,376	+	arnA	LU632_RS16485	0.31	+0.4
3,120,377	-	arnA	LU632_RS16485	0.31	-0.4
3,120,377	-	arnA	LU632_RS16485	0.31	-0.9
3,120,377	-	arnA	LU632_RS16485	0.31	-1.7
3,120,714	+	arnA	LU632_RS16485	0.48	-2.5
3,120,715	-	arnA	LU632_RS16485	0.48	-2.5
3,120,715	-	arnA	LU632_RS16485	0.48	+0.9
3,120,719	-	arnA	LU632_RS16485	0.48	-2.2
3,120,761	-	arnA	LU632_RS16485	0.50	-2.8
3,120,785	+	arnA	LU632_RS16485	0.52	-1.4
3,120,786	-	arnA	LU632_RS16485	0.52	-2.3
3,120,886	+	arnA	LU632_RS16485	0.57	-0.9
3,120,886	+	arnA	LU632_RS16485	0.57	+0.9
3,120,886	+	arnA	LU632_RS16485	0.57	+0.9
3,120,886	+	arnA	LU632_RS16485	0.57	-1.3
3,120,886	+	arnA	LU632_RS16485	0.57	+0.9
3,120,887	-	arnA	LU632_RS16485	0.57	-1.6
3,120,887	-	arnA	LU632_RS16485	0.57	+0.1
3,120,888	+	arnA	LU632_RS16485	0.57	-2.7
3,120,889	-	arnA	LU632_RS16485	0.57	-1.5
3,120,889	-	arnA	LU632_RS16485	0.57	-1.2
3,121,044	+	arnA	LU632_RS16485	0.65	-1.4
3,121,256	-	arnA	LU632_RS16485	0.75	+0.1
3,121,417	+	arnA	LU632_RS16485	0.83	-1.9
3,121,418	-	arnA	LU632_RS16485	0.84	-1.5
3,121,466	-	arnA	LU632_RS16485	0.86	+1.9
3,121,466	-	arnA	LU632_RS16485	0.86	-1.7
3,121,497	+	arnA	LU632_RS16485	0.87	+3.1
3,121,497	+	arnA	LU632_RS16485	0.87	-1.1
3,121,675	-				-1.4
3,121,745	+				-0.4
3,121,827	+				-0.7
3,121,829	+				-1.4
3,121,829	+				-1.4
3,121,829	+				-2.2
3,121,829	+				-1.3
3,121,830	-				-1.5
3,121,830	-				-2.3
3,121,830	-				-1.1
3,121,830	-				-1.6
3,121,830	-				-3.1
3,121,833	+				-0.4
3,121,833	+				-2.3
3,121,833	+				-2.5
3,121,834	-				-0.6
3,121,844	+	arnC	LU632_RS16490	0.10	+1.0
3,121,844	+	arnC	LU632_RS16490	0.10	-0.4
3,121,845	-	arnC	LU632_RS16490	0.10	-0.1
3,121,845	-	arnC	LU632_RS16490	0.10	-1.2
3,121,845	-	arnC	LU632_RS16490	0.10	-0.4
3,122,017	-	arnC	LU632_RS16490	0.28	-2.4
3,122,017	-	arnC	LU632_RS16490	0.28	+0.2
3,122,017	-	arnC	LU632_RS16490	0.28	-0.6
3,122,022	+	arnC	LU632_RS16490	0.28	+1.0
3,122,022	+	arnC	LU632_RS16490	0.28	-1.6
3,122,022	+	arnC	LU632_RS16490	0.28	-1.9
3,122,023	-	arnC	LU632_RS16490	0.28	+1.5
3,122,023	-	arnC	LU632_RS16490	0.28	-1.2
3,122,034	+	arnC	LU632_RS16490	0.30	-1.4
3,122,038	-	arnC	LU632_RS16490	0.30	-1.3
3,122,060	+	arnC	LU632_RS16490	0.32	-0.9
3,122,061	-	arnC	LU632_RS16490	0.32	-1.3
3,122,070	+	arnC	LU632_RS16490	0.33	-1.3
3,122,070	+	arnC	LU632_RS16490	0.33	-0.9
3,122,158	-	arnC	LU632_RS16490	0.42	-0.0
3,122,181	+	arnC	LU632_RS16490	0.45	+0.0
3,122,182	-	arnC	LU632_RS16490	0.45	-2.0
3,122,185	-	arnC	LU632_RS16490	0.45	-1.2
3,122,185	-	arnC	LU632_RS16490	0.45	-1.0
3,122,185	-	arnC	LU632_RS16490	0.45	-0.7
3,122,217	+	arnC	LU632_RS16490	0.48	+0.6
3,122,241	+	arnC	LU632_RS16490	0.51	-1.2
3,122,241	+	arnC	LU632_RS16490	0.51	-3.3
3,122,241	+	arnC	LU632_RS16490	0.51	-1.5
3,122,241	+	arnC	LU632_RS16490	0.51	-1.1
3,122,242	-	arnC	LU632_RS16490	0.51	-0.7
3,122,242	-	arnC	LU632_RS16490	0.51	-2.3
3,122,242	-	arnC	LU632_RS16490	0.51	+0.0
3,122,242	-	arnC	LU632_RS16490	0.51	-0.4
3,122,293	+	arnC	LU632_RS16490	0.56	-0.5
3,122,294	-	arnC	LU632_RS16490	0.56	-1.2
3,122,356	+	arnC	LU632_RS16490	0.62	+1.9
3,122,356	+	arnC	LU632_RS16490	0.62	-1.2
3,122,472	+	arnC	LU632_RS16490	0.74	-2.2
3,122,472	+	arnC	LU632_RS16490	0.74	-1.1
3,122,493	-	arnC	LU632_RS16490	0.76	-0.8
3,122,568	+	arnC	LU632_RS16490	0.84	+0.6
3,122,617	+	arnC	LU632_RS16490	0.89	-1.9
3,122,618	-	arnC	LU632_RS16490	0.89	-0.4
3,122,706	+				-0.1