Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15310

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
2,899,987	+		LU632_RS15305	0.70	-0.0
2,900,011	+		LU632_RS15305	0.73	-0.3
2,900,011	+		LU632_RS15305	0.73	+1.0
2,900,012	-		LU632_RS15305	0.73	-0.5
2,900,056	+		LU632_RS15305	0.79	-0.6
2,900,057	-		LU632_RS15305	0.79	-2.6
2,900,075	-		LU632_RS15305	0.81	+0.2
2,900,077	+		LU632_RS15305	0.81	+0.6
2,900,077	+		LU632_RS15305	0.81	-0.4
2,900,094	+		LU632_RS15305	0.83	-2.2
2,900,094	+		LU632_RS15305	0.83	-0.2
2,900,095	-		LU632_RS15305	0.83	+0.2
2,900,095	-		LU632_RS15305	0.83	-0.0
2,900,156	+				-2.6
2,900,156	+				+0.3
2,900,156	+				+0.6
2,900,156	+				+1.1
2,900,156	+				+0.4
2,900,156	+				-0.0
2,900,156	+				+0.4
2,900,157	-				-0.8
2,900,157	-				-0.5
2,900,157	-				+2.0
2,900,157	-				-0.1
2,900,157	-				-0.0
2,900,157	-				-0.4
2,900,157	-				+0.5
2,900,197	+				-0.6
2,900,245	+				-3.0
2,900,246	-				-0.9
2,900,246	-				-0.9
2,900,437	+				+0.5
2,900,438	-				+1.0
2,900,440	+				+0.7
2,900,441	-				+1.2
2,900,441	-				-0.0
2,900,441	-				+0.3
2,900,452	+				+0.4
2,900,561	+				+1.0
2,900,572	+				+2.2
2,900,585	-				+0.3
2,900,621	-				-3.1
2,900,670	-				+0.2
2,900,697	-				+0.1
2,900,699	+				-1.1
2,900,779	+				+1.4
2,900,906	-				+1.2
2,900,943	+	ybaK	LU632_RS15310	0.11	-0.3
2,900,943	+	ybaK	LU632_RS15310	0.11	+0.4
2,900,944	-	ybaK	LU632_RS15310	0.11	+0.3
2,900,945	+	ybaK	LU632_RS15310	0.11	+1.3
2,900,945	+	ybaK	LU632_RS15310	0.11	+1.2
2,900,945	+	ybaK	LU632_RS15310	0.11	-0.2
2,900,945	+	ybaK	LU632_RS15310	0.11	+1.4
2,900,946	-	ybaK	LU632_RS15310	0.11	-0.5
2,900,946	-	ybaK	LU632_RS15310	0.11	+1.6
2,900,946	-	ybaK	LU632_RS15310	0.11	+0.7
2,900,946	-	ybaK	LU632_RS15310	0.11	-2.1
2,900,949	+	ybaK	LU632_RS15310	0.12	-0.1
2,900,950	-	ybaK	LU632_RS15310	0.12	-0.2
2,900,950	-	ybaK	LU632_RS15310	0.12	+0.8
2,901,024	+	ybaK	LU632_RS15310	0.28	+0.1
2,901,024	+	ybaK	LU632_RS15310	0.28	-0.3
2,901,026	+	ybaK	LU632_RS15310	0.28	-1.4
2,901,038	-	ybaK	LU632_RS15310	0.30	-0.4
2,901,101	-	ybaK	LU632_RS15310	0.44	-0.4
2,901,108	-	ybaK	LU632_RS15310	0.45	-0.2
2,901,199	+	ybaK	LU632_RS15310	0.64	-0.9
2,901,302	-	ybaK	LU632_RS15310	0.85	+2.0
2,901,355	+				-0.7
2,901,464	+				-0.2
2,901,502	-				+0.3
2,901,511	+				-2.9
2,901,518	+				-0.1
2,901,519	-				-2.9
2,901,557	-				-0.6
2,901,582	-				-1.2
2,901,674	+				-0.2
2,901,674	+				-1.8
2,901,782	+		LU632_RS15315	0.13	+0.6
2,901,917	-		LU632_RS15315	0.24	+1.3
2,901,954	-		LU632_RS15315	0.28	-0.3
2,901,956	-		LU632_RS15315	0.28	-0.2
2,901,956	-		LU632_RS15315	0.28	-0.4
2,902,002	+		LU632_RS15315	0.32	+4.1
2,902,002	+		LU632_RS15315	0.32	+0.3
2,902,006	-		LU632_RS15315	0.32	-1.1
2,902,059	-		LU632_RS15315	0.37	+0.7
2,902,059	-		LU632_RS15315	0.37	+2.3
2,902,059	-		LU632_RS15315	0.37	-0.2
2,902,172	+		LU632_RS15315	0.47	+1.2
2,902,199	+		LU632_RS15315	0.49	-2.1
2,902,264	+		LU632_RS15315	0.55	-0.9
2,902,264	+		LU632_RS15315	0.55	+0.6
2,902,264	+		LU632_RS15315	0.55	-0.1
2,902,264	+		LU632_RS15315	0.55	+0.1
2,902,264	+		LU632_RS15315	0.55	+0.4
2,902,264	+		LU632_RS15315	0.55	-0.6
2,902,265	-		LU632_RS15315	0.55	-1.7
2,902,265	-		LU632_RS15315	0.55	-0.4
2,902,265	-		LU632_RS15315	0.55	+0.7
2,902,265	-		LU632_RS15315	0.55	+0.2
2,902,265	-		LU632_RS15315	0.55	-1.3
2,902,265	-		LU632_RS15315	0.55	+1.0
2,902,266	+		LU632_RS15315	0.55	+0.1
2,902,266	+		LU632_RS15315	0.55	+0.7
2,902,266	+		LU632_RS15315	0.55	-0.4
2,902,267	-		LU632_RS15315	0.55	-1.1
2,902,290	-		LU632_RS15315	0.57	-1.6
2,902,291	+		LU632_RS15315	0.57	+0.2
2,902,292	-		LU632_RS15315	0.57	+2.0