Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14445

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
2,751,535	+		LU632_RS14435	0.68	+0.1
2,751,535	+		LU632_RS14435	0.68	-2.2
2,751,536	-		LU632_RS14435	0.69	-0.3
2,751,624	+				-1.0
2,751,630	+				+0.6
2,751,630	+				+1.8
2,751,631	-				-0.1
2,751,631	-				-0.1
2,751,631	-				-1.3
2,751,771	-				-0.8
2,751,886	+		LU632_RS14440	0.13	-0.9
2,751,942	-		LU632_RS14440	0.21	+0.3
2,751,969	+		LU632_RS14440	0.25	+0.4
2,751,970	-		LU632_RS14440	0.25	+0.1
2,751,977	-		LU632_RS14440	0.26	-1.1
2,751,977	-		LU632_RS14440	0.26	-0.0
2,752,073	+		LU632_RS14440	0.40	-1.8
2,752,074	-		LU632_RS14440	0.40	+0.6
2,752,149	+		LU632_RS14440	0.51	+0.9
2,752,194	-		LU632_RS14440	0.57	+1.4
2,752,215	+		LU632_RS14440	0.60	+0.6
2,752,216	-		LU632_RS14440	0.61	+1.8
2,752,216	-		LU632_RS14440	0.61	-1.1
2,752,278	+		LU632_RS14440	0.70	+1.3
2,752,278	+		LU632_RS14440	0.70	+0.4
2,752,451	+				+1.0
2,752,512	+				+0.1
2,752,512	+				+0.9
2,752,523	+				-0.5
2,752,523	+				-1.0
2,752,524	-				-1.0
2,752,755	-		LU632_RS14445	0.23	-2.1
2,752,767	+		LU632_RS14445	0.24	+0.2
2,752,767	+		LU632_RS14445	0.24	+0.1
2,752,767	+		LU632_RS14445	0.24	+0.1
2,752,768	-		LU632_RS14445	0.24	-2.5
2,752,768	-		LU632_RS14445	0.24	-0.2
2,752,768	-		LU632_RS14445	0.24	-0.5
2,752,796	-		LU632_RS14445	0.27	+0.2
2,753,004	+		LU632_RS14445	0.46	-0.7
2,753,064	+		LU632_RS14445	0.52	-1.8
2,753,064	+		LU632_RS14445	0.52	-0.5
2,753,171	+		LU632_RS14445	0.62	-0.5
2,753,183	+		LU632_RS14445	0.63	-1.5
2,753,184	-		LU632_RS14445	0.63	-2.3
2,753,184	-		LU632_RS14445	0.63	-2.4
2,753,281	-		LU632_RS14445	0.72	-0.5
2,753,281	-		LU632_RS14445	0.72	+1.8
2,753,723	+				-1.2
2,753,724	-				-0.8
2,753,724	-				-0.5
2,753,750	+		LU632_RS14450	0.10	-0.4
2,753,751	-		LU632_RS14450	0.10	-1.3
2,753,839	-		LU632_RS14450	0.15	+0.6
2,753,839	-		LU632_RS14450	0.15	-2.4
2,753,873	-		LU632_RS14450	0.17	-1.1
2,753,897	+		LU632_RS14450	0.19	-2.7
2,754,087	+		LU632_RS14450	0.30	+2.4
2,754,087	+		LU632_RS14450	0.30	-1.2
2,754,089	+		LU632_RS14450	0.30	+0.8
2,754,089	+		LU632_RS14450	0.30	-0.1
2,754,089	+		LU632_RS14450	0.30	-0.0
2,754,090	-		LU632_RS14450	0.30	-0.3
2,754,090	-		LU632_RS14450	0.30	+0.3
2,754,090	-		LU632_RS14450	0.30	-0.1
2,754,090	-		LU632_RS14450	0.30	-1.0
2,754,090	-		LU632_RS14450	0.30	-1.9
2,754,090	-		LU632_RS14450	0.30	+0.2
2,754,090	-		LU632_RS14450	0.30	+3.1
2,754,090	-		LU632_RS14450	0.30	-3.4
2,754,090	-		LU632_RS14450	0.30	-2.9
2,754,090	-		LU632_RS14450	0.30	-1.6
2,754,157	+		LU632_RS14450	0.34	-0.7
2,754,341	+		LU632_RS14450	0.44	-0.4
2,754,357	+		LU632_RS14450	0.45	+0.4
2,754,358	-		LU632_RS14450	0.45	-2.1
2,754,360	+		LU632_RS14450	0.45	-0.9
2,754,360	+		LU632_RS14450	0.45	+0.3
2,754,361	-		LU632_RS14450	0.45	+0.2
2,754,405	-		LU632_RS14450	0.48	+1.7
2,754,429	+		LU632_RS14450	0.49	-1.2