Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12250

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
2,325,506	+				+0.0
2,325,516	+				+1.7
2,325,516	-				-0.8
2,325,551	+				+0.7
2,325,614	-				+1.9
2,325,614	-				+1.0
2,325,616	-				-0.0
2,325,643	+				+0.7
2,325,644	-				-0.8
2,325,644	-				-0.2
2,325,801	+				-1.5
2,325,974	+		LU632_RS12250	0.12	-1.3
2,325,974	+		LU632_RS12250	0.12	-1.0
2,325,974	+		LU632_RS12250	0.12	+0.6
2,325,974	+		LU632_RS12250	0.12	+1.3
2,325,974	+		LU632_RS12250	0.12	-1.2
2,325,976	+		LU632_RS12250	0.12	-1.0
2,326,062	+		LU632_RS12250	0.16	-0.2
2,326,062	+		LU632_RS12250	0.16	+0.3
2,326,138	+		LU632_RS12250	0.19	+0.8
2,326,139	-		LU632_RS12250	0.19	-0.3
2,326,178	-		LU632_RS12250	0.21	-2.5
2,326,184	+		LU632_RS12250	0.21	-1.1
2,326,185	-		LU632_RS12250	0.21	+0.4
2,326,210	-		LU632_RS12250	0.23	-0.3
2,326,230	+		LU632_RS12250	0.23	-0.2
2,326,230	+		LU632_RS12250	0.23	+0.4
2,326,420	-		LU632_RS12250	0.32	+0.7
2,326,422	+		LU632_RS12250	0.32	-0.9
2,326,423	-		LU632_RS12250	0.32	-1.6
2,326,513	+		LU632_RS12250	0.36	+0.2
2,326,514	-		LU632_RS12250	0.36	-1.3
2,326,571	+		LU632_RS12250	0.38	-0.5
2,326,663	+		LU632_RS12250	0.42	+0.7
2,326,664	-		LU632_RS12250	0.42	-0.4
2,326,701	+		LU632_RS12250	0.44	-0.6
2,326,727	+		LU632_RS12250	0.45	+0.8
2,326,728	-		LU632_RS12250	0.45	-0.6
2,326,749	+		LU632_RS12250	0.46	-1.0
2,326,908	+		LU632_RS12250	0.53	+0.3
2,326,909	-		LU632_RS12250	0.53	+0.5
2,327,045	+		LU632_RS12250	0.59	+0.2
2,327,045	+		LU632_RS12250	0.59	-0.7
2,327,045	+		LU632_RS12250	0.59	+2.5
2,327,057	+		LU632_RS12250	0.59	-1.5
2,327,158	-		LU632_RS12250	0.64	+1.8
2,327,289	+		LU632_RS12250	0.69	+0.6
2,327,422	+		LU632_RS12250	0.75	+0.7
2,327,422	+		LU632_RS12250	0.75	-2.8
2,327,442	+		LU632_RS12250	0.76	+0.0
2,327,467	-		LU632_RS12250	0.77	-2.1
2,327,476	-		LU632_RS12250	0.77	-0.2
2,327,493	+		LU632_RS12250	0.78	+0.1
2,327,506	+		LU632_RS12250	0.79	+0.6
2,327,506	+		LU632_RS12250	0.79	+1.1
2,327,531	+		LU632_RS12250	0.80	-2.0
2,327,541	+		LU632_RS12250	0.80	+0.8
2,327,629	-		LU632_RS12250	0.84	-1.8
2,327,670	+		LU632_RS12250	0.86	-0.3
2,327,671	-		LU632_RS12250	0.86	+2.1
2,327,671	-		LU632_RS12250	0.86	-0.8
2,327,674	+		LU632_RS12250	0.86	-1.5
2,327,704	+		LU632_RS12250	0.87	+0.4
2,327,704	+		LU632_RS12250	0.87	-0.4
2,327,704	+		LU632_RS12250	0.87	+0.1
2,327,705	-		LU632_RS12250	0.87	+1.7
2,327,705	-		LU632_RS12250	0.87	+0.3
2,327,810	+				-1.2
2,327,811	-				+1.0
2,327,814	+				-1.8
2,327,843	-				-0.8
2,327,872	+				-0.6
2,328,010	+				+0.3
2,328,011	-				+0.5
2,328,011	-				+1.0
2,328,011	-				-0.2
2,328,084	+				+0.5
2,328,084	+				+0.0
2,328,157	+				-0.9
2,328,158	-				-2.0
2,328,158	-				-2.1
2,328,158	-				-0.5
2,328,158	-				-0.1
2,328,158	-				-0.9
2,328,158	-				-0.1
2,328,159	+				-0.5
2,328,159	+				-0.0
2,328,159	+				-0.1
2,328,159	+				-0.1
2,328,160	-				-0.6
2,328,160	-				+0.1
2,328,160	-				+0.5
2,328,323	+				-1.3
2,328,323	+				-0.2
2,328,363	+				-2.3