Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10390

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
1,984,252	-				-2.5
1,984,255	+				+0.2
1,984,302	+				+1.8
1,984,337	-				+0.1
1,984,453	+	flgN	LU632_RS10380	0.31	+1.0
1,984,454	-	flgN	LU632_RS10380	0.31	-1.2
1,984,454	-	flgN	LU632_RS10380	0.31	+0.2
1,984,457	+	flgN	LU632_RS10380	0.32	-0.7
1,984,533	+	flgN	LU632_RS10380	0.50	-0.2
1,984,688	+	flgN	LU632_RS10380	0.85	+0.1
1,984,688	+	flgN	LU632_RS10380	0.85	-0.2
1,984,688	+	flgN	LU632_RS10380	0.85	+0.2
1,985,108	-				-2.6
1,985,170	+				+0.2
1,985,171	-				-0.1
1,985,172	+				-0.4
1,985,172	+				-0.7
1,985,267	-	flgA	LU632_RS10390	0.16	-3.1
1,985,334	+	flgA	LU632_RS10390	0.26	-0.6
1,985,499	+	flgA	LU632_RS10390	0.51	-0.5
1,985,531	+	flgA	LU632_RS10390	0.55	-1.2
1,985,531	+	flgA	LU632_RS10390	0.55	-0.1
1,985,531	+	flgA	LU632_RS10390	0.55	-0.8
1,985,531	+	flgA	LU632_RS10390	0.55	-0.4
1,985,531	+	flgA	LU632_RS10390	0.55	+0.5
1,985,531	+	flgA	LU632_RS10390	0.55	+1.4
1,985,531	+	flgA	LU632_RS10390	0.55	-0.6
1,985,532	-	flgA	LU632_RS10390	0.55	-0.3
1,985,532	-	flgA	LU632_RS10390	0.55	+0.8
1,985,532	-	flgA	LU632_RS10390	0.55	-0.3
1,985,691	+	flgA	LU632_RS10390	0.79	-0.7
1,985,833	-				+1.1
1,985,833	-				-1.2
1,985,947	+				+0.5
1,985,947	+				-0.2
1,986,072	+	flgB	LU632_RS10395	0.21	-0.1
1,986,072	+	flgB	LU632_RS10395	0.21	-0.2
1,986,079	-	flgB	LU632_RS10395	0.23	+0.0
1,986,202	-	flgB	LU632_RS10395	0.53	+0.1
1,986,245	-	flgB	LU632_RS10395	0.63	-2.7
1,986,245	-	flgB	LU632_RS10395	0.63	-0.4
1,986,372	+				-0.2
1,986,397	+				+0.6
1,986,397	+				+0.9
1,986,398	-				-0.8
1,986,398	-				+1.6
1,986,398	-				+0.8
1,986,417	+				-1.5
1,986,526	+	flgC	LU632_RS10400	0.30	-0.2
1,986,526	+	flgC	LU632_RS10400	0.30	+0.8
1,986,634	+	flgC	LU632_RS10400	0.57	-0.2
1,986,684	+	flgC	LU632_RS10400	0.69	-0.6
1,986,698	+	flgC	LU632_RS10400	0.73	+0.0
1,986,715	-	flgC	LU632_RS10400	0.77	-0.7
1,986,737	-	flgC	LU632_RS10400	0.82	-0.3
1,986,737	-	flgC	LU632_RS10400	0.82	-0.5