Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08770

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
1,647,535	-	wbaP	LU632_RS08765	0.51	+5.8
1,647,559	-	wbaP	LU632_RS08765	0.52	+6.0
1,647,559	-	wbaP	LU632_RS08765	0.52	+4.9
1,647,579	-	wbaP	LU632_RS08765	0.54	+6.9
1,647,697	+	wbaP	LU632_RS08765	0.62	+2.0
1,647,698	-	wbaP	LU632_RS08765	0.62	+6.6
1,647,718	+	wbaP	LU632_RS08765	0.63	+5.9
1,647,718	+	wbaP	LU632_RS08765	0.63	+6.3
1,647,788	-	wbaP	LU632_RS08765	0.68	+2.2
1,648,022	-	wbaP	LU632_RS08765	0.85	+7.5
1,648,022	-	wbaP	LU632_RS08765	0.85	+6.9
1,648,062	-	wbaP	LU632_RS08765	0.87	+7.1
1,648,064	+	wbaP	LU632_RS08765	0.87	+7.2
1,648,065	-	wbaP	LU632_RS08765	0.88	+7.6
1,648,067	+	wbaP	LU632_RS08765	0.88	+5.9
1,648,067	+	wbaP	LU632_RS08765	0.88	+4.6
1,648,067	+	wbaP	LU632_RS08765	0.88	+6.2
1,648,067	+	wbaP	LU632_RS08765	0.88	+6.2
1,648,067	+	wbaP	LU632_RS08765	0.88	+8.0
1,648,067	+	wbaP	LU632_RS08765	0.88	+6.9
1,648,067	+	wbaP	LU632_RS08765	0.88	+4.6
1,648,067	+	wbaP	LU632_RS08765	0.88	+8.6
1,648,068	-	wbaP	LU632_RS08765	0.88	+5.5
1,648,068	-	wbaP	LU632_RS08765	0.88	+3.5
1,648,068	-	wbaP	LU632_RS08765	0.88	+4.9
1,648,069	+	wbaP	LU632_RS08765	0.88	+6.0
1,648,069	+	wbaP	LU632_RS08765	0.88	+11.8
1,648,143	-				+6.0
1,648,162	-				+4.9
1,648,288	-				+1.7
1,648,303	+				+0.4
1,648,304	-				-2.2
1,648,308	+				+2.9
1,648,308	+				+0.5
1,648,340	+				+0.5
1,648,341	-				+1.0
1,648,341	-				-2.8
1,648,395	-				+1.8
1,648,396	+				+0.8
1,648,396	+				+1.1
1,648,396	+				-1.1
1,648,396	+				+0.3
1,648,397	-				-1.0
1,648,407	+				+0.2
1,648,408	-				-2.8
1,648,411	+				-0.3
1,648,411	+				+0.5
1,648,414	+				-0.8
1,648,414	+				+0.2
1,648,414	+				+0.2
1,648,441	+				+0.3
1,648,458	-				-3.0
1,648,492	-				-2.5
1,648,517	-				-4.4
1,648,542	+				-3.7
1,648,549	+				-4.4
1,648,549	+				-2.5
1,648,556	-				-5.5
1,648,651	+		LU632_RS08770	0.12	-4.0
1,648,656	-		LU632_RS08770	0.13	-2.8
1,648,656	-		LU632_RS08770	0.13	-1.0
1,648,717	-		LU632_RS08770	0.18	-2.2
1,648,749	+		LU632_RS08770	0.21	-4.5
1,648,750	-		LU632_RS08770	0.21	-2.5
1,648,862	-		LU632_RS08770	0.31	-3.6
1,648,885	+		LU632_RS08770	0.33	-4.2
1,648,886	-		LU632_RS08770	0.33	-0.3
1,648,899	-		LU632_RS08770	0.34	-2.1
1,648,975	+		LU632_RS08770	0.41	-5.2
1,648,976	-		LU632_RS08770	0.41	-1.6
1,648,992	+		LU632_RS08770	0.42	-1.7
1,648,998	+		LU632_RS08770	0.43	-5.2
1,648,999	-		LU632_RS08770	0.43	-3.7
1,648,999	-		LU632_RS08770	0.43	-0.6
1,649,014	+		LU632_RS08770	0.44	-0.8
1,649,014	+		LU632_RS08770	0.44	-0.8
1,649,050	+		LU632_RS08770	0.48	-1.2
1,649,050	+		LU632_RS08770	0.48	-0.0
1,649,234	+		LU632_RS08770	0.64	-5.0
1,649,453	-		LU632_RS08770	0.83	+0.4
1,649,456	+		LU632_RS08770	0.83	-0.8
1,649,603	+				-3.0
1,649,603	+				-2.7
1,649,665	+				-0.8
1,649,695	+				-3.6
1,649,695	+				-2.9
1,649,769	+		LU632_RS08775	0.25	-3.7
1,649,770	-		LU632_RS08775	0.25	-2.0
1,649,771	+		LU632_RS08775	0.26	-1.6
1,649,771	+		LU632_RS08775	0.26	-3.3
1,649,772	-		LU632_RS08775	0.26	-1.0
1,649,851	-		LU632_RS08775	0.44	-2.5
1,649,967	+		LU632_RS08775	0.71	-3.3
1,649,968	+		LU632_RS08775	0.71	-3.7
1,649,983	+		LU632_RS08775	0.74	-0.6
1,650,042	-		LU632_RS08775	0.88	-2.4
1,650,048	+		LU632_RS08775	0.89	-5.0
1,650,049	-		LU632_RS08775	0.89	+1.0
1,650,085	-				-1.7
1,650,112	+				-1.0
1,650,113	-				-2.9
1,650,113	-				-4.8
1,650,121	+				-1.6
1,650,225	+				-2.5
1,650,226	-				-5.5
1,650,226	-				-1.8
1,650,229	+				-1.9
1,650,229	+				-3.2
1,650,230	-				-3.0
1,650,230	-				-2.3
1,650,248	+				-1.9
1,650,249	-				-0.8
1,650,249	-				-1.8
1,650,249	-				-4.1
1,650,516	+	wzc	LU632_RS08780	0.19	-3.9
1,650,517	-	wzc	LU632_RS08780	0.19	-5.1
1,650,517	-	wzc	LU632_RS08780	0.19	-2.5
1,650,622	+	wzc	LU632_RS08780	0.24	-1.8