Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06635

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
1,273,231	+				-0.4
1,273,242	+				-1.4
1,273,243	-				-0.3
1,273,245	-				+1.5
1,273,266	-				-2.4
1,273,271	-				+4.3
1,273,277	-				-0.0
1,273,396	+	cysZ	LU632_RS06630	0.19	+0.1
1,273,455	+	cysZ	LU632_RS06630	0.27	-0.6
1,273,537	+	cysZ	LU632_RS06630	0.38	-0.6
1,273,543	-	cysZ	LU632_RS06630	0.38	+0.4
1,273,544	+	cysZ	LU632_RS06630	0.39	+1.0
1,273,544	+	cysZ	LU632_RS06630	0.39	+0.4
1,273,575	+	cysZ	LU632_RS06630	0.43	+0.7
1,273,576	-	cysZ	LU632_RS06630	0.43	+1.4
1,273,671	-	cysZ	LU632_RS06630	0.55	+2.6
1,273,691	+	cysZ	LU632_RS06630	0.58	+0.5
1,273,792	-	cysZ	LU632_RS06630	0.71	+0.3
1,273,792	-	cysZ	LU632_RS06630	0.71	-1.4
1,273,997	-				+2.0
1,274,026	-				+0.1
1,274,029	+				+0.5
1,274,029	+				+0.0
1,274,030	-				+1.7
1,274,051	+				+0.2
1,274,052	-				+0.7
1,274,052	-				-1.2
1,274,063	-				-1.2
1,274,171	+				-2.0
1,274,207	+				+0.9
1,274,745	+	zipA	LU632_RS06635	0.56	-1.0
1,274,899	+	zipA	LU632_RS06635	0.73	+0.4
1,274,899	+	zipA	LU632_RS06635	0.73	-3.8
1,274,995	+	zipA	LU632_RS06635	0.83	-3.6
1,275,034	+	zipA	LU632_RS06635	0.88	-2.6
1,275,107	+				-4.2
1,275,167	+				+0.5