Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06305

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
1,205,309	+	truC	LU632_RS06295	0.39	+0.3
1,205,310	-	truC	LU632_RS06295	0.39	+0.6
1,205,496	+	truC	LU632_RS06295	0.63	-0.9
1,205,496	+	truC	LU632_RS06295	0.63	-1.3
1,205,497	-	truC	LU632_RS06295	0.63	-1.0
1,205,506	+	truC	LU632_RS06295	0.64	-1.0
1,205,506	+	truC	LU632_RS06295	0.64	-0.2
1,205,506	+	truC	LU632_RS06295	0.64	+0.8
1,205,507	-	truC	LU632_RS06295	0.64	+0.9
1,205,661	+	truC	LU632_RS06295	0.84	-0.4
1,205,834	-				-0.3
1,205,945	+		LU632_RS06300	0.31	+0.1
1,205,945	+		LU632_RS06300	0.31	-0.8
1,205,945	+		LU632_RS06300	0.31	-0.8
1,205,946	-		LU632_RS06300	0.31	-0.7
1,206,018	+		LU632_RS06300	0.47	+0.1
1,206,081	+		LU632_RS06300	0.61	-0.0
1,206,081	+		LU632_RS06300	0.61	-0.0
1,206,082	-		LU632_RS06300	0.61	+0.6
1,206,082	-		LU632_RS06300	0.61	+1.1
1,206,095	+		LU632_RS06300	0.64	+0.6
1,206,095	+		LU632_RS06300	0.64	-1.3
1,206,095	+		LU632_RS06300	0.64	+0.0
1,206,095	+		LU632_RS06300	0.64	-0.5
1,206,096	-		LU632_RS06300	0.64	+0.3
1,206,096	-		LU632_RS06300	0.64	-0.8
1,206,306	-				+1.7
1,206,637	+	garD	LU632_RS06305	0.22	+0.5
1,206,638	-	garD	LU632_RS06305	0.22	-1.1
1,206,689	+	garD	LU632_RS06305	0.25	+1.0
1,206,689	+	garD	LU632_RS06305	0.25	-0.1
1,206,690	-	garD	LU632_RS06305	0.25	-0.7
1,206,777	-	garD	LU632_RS06305	0.31	+1.8
1,206,808	+	garD	LU632_RS06305	0.33	+1.0
1,206,809	-	garD	LU632_RS06305	0.33	+1.6
1,206,817	+	garD	LU632_RS06305	0.33	+0.4
1,206,818	-	garD	LU632_RS06305	0.33	-0.2
1,207,100	+	garD	LU632_RS06305	0.51	+0.2
1,207,101	-	garD	LU632_RS06305	0.51	-0.6
1,207,152	+	garD	LU632_RS06305	0.55	-0.6
1,207,152	+	garD	LU632_RS06305	0.55	-1.5
1,207,182	+	garD	LU632_RS06305	0.57	-0.1
1,207,248	+	garD	LU632_RS06305	0.61	-0.0
1,207,343	-	garD	LU632_RS06305	0.67	-1.7
1,207,344	+	garD	LU632_RS06305	0.67	-2.8
1,207,344	+	garD	LU632_RS06305	0.67	+0.1
1,207,420	+	garD	LU632_RS06305	0.72	-0.3
1,207,420	+	garD	LU632_RS06305	0.72	-1.3
1,207,420	+	garD	LU632_RS06305	0.72	+0.8
1,207,421	-	garD	LU632_RS06305	0.72	-0.8
1,207,518	-	garD	LU632_RS06305	0.78	+0.6
1,207,634	+	garD	LU632_RS06305	0.86	+1.0
1,207,671	+	garD	LU632_RS06305	0.88	-0.6
1,207,671	+	garD	LU632_RS06305	0.88	+0.4
1,207,671	+	garD	LU632_RS06305	0.88	+1.7
1,207,672	-	garD	LU632_RS06305	0.88	-0.1
1,207,828	+				-0.1
1,207,829	-				+0.1
1,207,882	+				-0.6
1,207,882	+				+2.2
1,207,895	+				-0.8
1,207,905	+				-0.3
1,208,161	+				+1.0
1,208,162	-				-1.8
1,208,205	+				-0.3
1,208,205	+				-0.1
1,208,205	+				+0.2
1,208,206	-				+0.7
1,208,315	+				-0.2
1,208,316	-				+2.4
1,208,316	-				-0.4
1,208,316	-				-0.5
1,208,458	+				-0.7
1,208,542	+		LU632_RS06310	0.13	+1.3
1,208,542	+		LU632_RS06310	0.13	-0.4
1,208,542	+		LU632_RS06310	0.13	+0.0
1,208,543	-		LU632_RS06310	0.13	-0.0
1,208,567	+		LU632_RS06310	0.15	+2.0
1,208,567	+		LU632_RS06310	0.15	+0.1
1,208,567	+		LU632_RS06310	0.15	+0.6
1,208,568	-		LU632_RS06310	0.15	+0.4
1,208,568	-		LU632_RS06310	0.15	+0.1
1,208,568	-		LU632_RS06310	0.15	-0.2
1,208,719	+		LU632_RS06310	0.26	+0.7
1,208,824	+		LU632_RS06310	0.34	-0.4
1,208,830	+		LU632_RS06310	0.35	-0.5
1,208,844	-		LU632_RS06310	0.36	+0.4